Locus 5706

Sequence ID 3L_DroMel_CAF1
Location 15,592,053 – 15,592,173
Length 120
Max. P 0.975313
window9025

overview

Window 5

Location 15,592,053 – 15,592,173
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 94.50
Mean single sequence MFE -28.56
Consensus MFE -27.50
Energy contribution -27.26
Covariance contribution -0.24
Combinations/Pair 1.09
Mean z-score -1.46
Structure conservation index 0.96
SVM decision value 1.75
SVM RNA-class probability 0.975313
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15592053 120 - 23771897
GAUGAGGCUUGUCAGCGGGACUUAUGAAUAAAAAUUGUUGCUAACGCUGGCAAUAUCGCUUGGUAAUCGUGUAAAUCAAUUGAACCAAUUCAAGAAAUUCGUAAUCCUGGUGUCAUAAAA
.........((.((.(((((.((((((((......((((((((....))))))))....(((((.....((.....)).....)))))........))))))))))))).)).))..... ( -29.00)
>DroSec_CAF1 15450 120 - 1
GAUGAGGCUUGUCAACAGGACUUAUGAAUAAAAAUUGUUGCUAACGCUGGCAAUAUCGCUUGGUAAUCGUGUAAAUCAAUUGAACCAAUUCAAGAAAUUCGUAAUCCUGGUGUCAUAAAA
.((((.((.......(((((.((((((((......((((((((....))))))))....(((((.....((.....)).....)))))........))))))))))))))).)))).... ( -28.01)
>DroSim_CAF1 15399 120 - 1
GAUGAGGCUUGUCAACAGGACUUAUGAAUAAAAAUUGUUGCUAACGCUGGCAAUAUCGCUUGGUAAUCGUGUAAAUCAAUUGAACCAAUUCAAGAAAUUCGUAAUCCUGGUGUCAUAAAA
.((((.((.......(((((.((((((((......((((((((....))))))))....(((((.....((.....)).....)))))........))))))))))))))).)))).... ( -28.01)
>DroEre_CAF1 15454 118 - 1
CAUGAGGCUUGUCAGCAGGACUUAUGAAUAAAAAUUGCUGCUUUCGCUGGCAAUAUCGCUUGGUAAUCGUGUAAAUCAACUGAACCAAUCCAAGAAAAUCUUAAUCCUGGUGUCG--AAA
........(((.((.(((((.(((.((......((((((((....)).))))))....(((((...(((.((......)))))......)))))....)).)))))))).)).))--).. ( -25.70)
>DroYak_CAF1 16678 120 - 1
CAUGAGGCUUGUCAGCAGGACUUAUGAAUAAAAAUUGCUGCUAACGCUGGCAAUAUCGCUUGGUAGUCGUGUAAAUCAAUUGAACCAAUCCAAGAAAUUCGUAAUCCUGGUGUCGUAAAA
..........(.((.(((((.((((((((....((((((((....)).))))))....(((((...(((...........)))......)))))..))))))))))))).)).)...... ( -32.10)
>consensus
GAUGAGGCUUGUCAGCAGGACUUAUGAAUAAAAAUUGUUGCUAACGCUGGCAAUAUCGCUUGGUAAUCGUGUAAAUCAAUUGAACCAAUUCAAGAAAUUCGUAAUCCUGGUGUCAUAAAA
.........((.((.(((((.((((((((....((((((((....)).)))))).....(((((.....((.....)).....)))))........))))))))))))).)).))..... (-27.50 = -27.26 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:09 2006