Locus 5705

Sequence ID 3L_DroMel_CAF1
Location 15,591,472 – 15,591,592
Length 120
Max. P 0.648527
window9024

overview

Window 4

Location 15,591,472 – 15,591,592
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 96.94
Mean single sequence MFE -28.61
Consensus MFE -23.39
Energy contribution -24.02
Covariance contribution 0.63
Combinations/Pair 1.05
Mean z-score -2.51
Structure conservation index 0.82
SVM decision value 0.24
SVM RNA-class probability 0.648527
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15591472 120 - 23771897
CUUUCGCUCUCAUUUGCCGUACGCACACAAACACAAGCGUCGAUGGCAAAGCGGCUCACACACAAAGCAAUGAGAGCUGCGCAAACAAAUCAACAAAGCCAGGCAACAACACAAACACUG
.....((.....((((((((((((............))))..))))))))(((((((.((..........)).)))))))))...................(....)............. ( -28.50)
>DroSec_CAF1 14675 120 - 1
CUUUCGCUCUCAUUUGCCGUACGCACACAAACACAAGCGUCGAUGGCAAAGCGGCUCACACACAAAGCAAUGAGAGCUGCGCAAACAAAUCAACAAAGCCAGGCAACAACACAAACACUG
.....((.....((((((((((((............))))..))))))))(((((((.((..........)).)))))))))...................(....)............. ( -28.50)
>DroSim_CAF1 14584 120 - 1
CUUUCGCUCUCAUUUGCCGUACGCACACAAACACAAGUGUCGAUGGCAAAGCGGCUCACACACAAGGCAAUGAGAGCUGCGCAAACAAAUCAACAAAGCCAGGCAACAACACAAACACUG
.....((.....((((((((.((.((((........))))))))))))))(((((((.((..........)).)))))))))...................(....)............. ( -31.50)
>DroEre_CAF1 14767 119 - 1
CUUUCGCUCUCAU-UGCCGUACACACACAAACACAAGCGUCGAUGGGAAAGCGGCUCACACACAAGGCAAUUUGAGCUGCGCAAACAAAUCAACAAAGCCAGGCAACAACACAAACACUG
.....((((((((-((.(((................))).))))))))..((((((((..............))))))))))...................(....)............. ( -25.93)
>consensus
CUUUCGCUCUCAUUUGCCGUACGCACACAAACACAAGCGUCGAUGGCAAAGCGGCUCACACACAAAGCAAUGAGAGCUGCGCAAACAAAUCAACAAAGCCAGGCAACAACACAAACACUG
.....((.....((((((((((((............))))..))))))))(((((((................)))))))))...................(....)............. (-23.39 = -24.02 +   0.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:08 2006