Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 15,590,786 – 15,590,906 |
Length | 120 |
Max. P | 0.692850 |
Location | 15,590,786 – 15,590,906 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 99.00 |
Mean single sequence MFE | -23.22 |
Consensus MFE | -22.94 |
Energy contribution | -23.14 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.26 |
Structure conservation index | 0.99 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.692850 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15590786 120 - 23771897 GGCGCAGCGUGUGGCUUAAUGGGUAGUUUUAAAAUUAACCACAGCGAAAAGAAAGAGCAGAAAAAACCGAAGAAGUCAAAGUCUGAGAAUGGAGCAAAAUUCAAUUAAAAGCCAGCAACA (((.((((...((((((..(((((.(((........))).)).((...........))........)))...))))))..).))).((((........))))........)))....... ( -22.50) >DroSec_CAF1 14042 120 - 1 GGCGCAGCGUGUGGCUUUAUGGGUAGUUUUAAAAUUAACCACAGCGAAAAGAAAGAGCAGAAAAAACCGAAGAAGUCAAAGUCUGAGAAUGGAGCAAAAUUCAAUUAAAAGCCAGCAACA (((.((((...(((((((.(.(((.(((........)))....((...........)).......))).).)))))))..).))).((((........))))........)))....... ( -23.40) >DroSim_CAF1 14013 120 - 1 GGCGCAGCGUGUGGCUUUAUGGGUAGUUUUAAAAUUAACCACAGCGAAAAGAAAGAGCAGAAAAAACCGAAGAAGUCAAAGUCUGAGAAUGGAGCAAAAUUCAAUUAAAAGCCAGCAACA (((.((((...(((((((.(.(((.(((........)))....((...........)).......))).).)))))))..).))).((((........))))........)))....... ( -23.40) >DroEre_CAF1 13999 119 - 1 GGCGCAGCGUGUGGCUUUAUGGGUAGUUUUAAAAUUAACCACAGCGAAAAGAAAGAGCAGAAA-AACCGAAGAAGUCAAAGUCUGAGAAUGGAGCAAAAUUCAAUUAAAAGCCAGCAACA (((.((((...(((((((.(.(((.(((........)))....((...........)).....-.))).).)))))))..).))).((((........))))........)))....... ( -23.40) >DroYak_CAF1 15342 120 - 1 GGCGCAGCGUGUGGCUUUAUGGGUAGUUUUAAAAUUAACCACAGCGAAAAGAAAGAGCAGAAAAAACCGAAGAAGUCAAAGUCUGAGAAUGAAGCAAAAUUCAAUUAAAAGCCAGCAACA (((.((((...(((((((.(.(((.(((........)))....((...........)).......))).).)))))))..).))).((((........))))........)))....... ( -23.40) >consensus GGCGCAGCGUGUGGCUUUAUGGGUAGUUUUAAAAUUAACCACAGCGAAAAGAAAGAGCAGAAAAAACCGAAGAAGUCAAAGUCUGAGAAUGGAGCAAAAUUCAAUUAAAAGCCAGCAACA (((.((((...(((((((.(.(((.(((........)))....((...........)).......))).).)))))))..).))).((((........))))........)))....... (-22.94 = -23.14 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:07 2006