| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,589,683 – 15,589,793 |
| Length | 110 |
| Max. P | 0.994448 |
| Location | 15,589,683 – 15,589,793 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 95.18 |
| Mean single sequence MFE | -22.13 |
| Consensus MFE | -21.30 |
| Energy contribution | -20.90 |
| Covariance contribution | -0.40 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.96 |
| SVM decision value | 2.48 |
| SVM RNA-class probability | 0.994448 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15589683 110 - 23771897 UCGAUGAUCGCUUAGGAGAUAGCUCUUCCACCUGGAUCAGGGCAUAAAUCUCUCUCAGAGCUACAUUUGUCCCGCUUUAUUUAUCUCUCUCACAUAUCAACCCCUUGGCA ....((((.....((((((((((((((((....)))..))))).............(((((.((....))...)))))...)))))).)).....))))........... ( -21.10) >DroSec_CAF1 13044 110 - 1 UCAAUGAUCGCCUGGGAGAUAGCUCUUCCACCUGGAUCUGGGCAUAAAUCUCUCUCAGAGCUCCAUUUGUCCCGCUUUAUUUAUCUCUCUCACAUAUCAACCCCUUGGCA .........(((.((((((((((((.(((....)))...)))).............(((((............)))))...)))))))).................))). ( -24.17) >DroSim_CAF1 13004 110 - 1 UGAAUGAUCGUCUAGGAGAUAGCUCUUCCACCUGGAUCUGAGCAUAAAUCUCUCUCAGAGCUCCAUUUGUCCCGCUUUAUUUAUCUCUCUCACAUAUCAACCCCUUGGCA ....((((.((...(((((((((((.(((....)))...)))).............(((((............)))))...)))))))...))..))))........... ( -21.60) >DroEre_CAF1 12947 110 - 1 UCAAUGAUCGCACAGGAGAUAGCUCUUCCACCUGGAUCUGAGCAUAAAUCUCUCUCAGAGCUCCAUUUGUCCCGCUUUAUUUAUCUCUCUCACAUAUCAACCCCUUGGCA ....((((.....((((((((((((.(((....)))...)))).............(((((............)))))...)))))).)).....))))........... ( -21.40) >DroYak_CAF1 14209 110 - 1 UCAAUGAUCGCCUAGGAGAUAGCUCUUCCACCUGGAUCUGAGCAUAAAUCUCUUUCAGAGCUCCAUUUGUCCCGCUUUAUUUAUCUCUCUCACAUAUCAACCCUCUGGCA .........(((.(((.((((((((.(((....)))...)))).............(((((............)))))................))))...)))..))). ( -22.40) >consensus UCAAUGAUCGCCUAGGAGAUAGCUCUUCCACCUGGAUCUGAGCAUAAAUCUCUCUCAGAGCUCCAUUUGUCCCGCUUUAUUUAUCUCUCUCACAUAUCAACCCCUUGGCA ....((((.....((((((((((((.(((....)))...)))).............(((((............)))))...)))))).)).....))))........... (-21.30 = -20.90 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:57 2006