Locus 5700

Sequence ID 3L_DroMel_CAF1
Location 15,589,464 – 15,589,581
Length 117
Max. P 0.907848
window9012

overview

Window 2

Location 15,589,464 – 15,589,581
Length 117
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 90.30
Mean single sequence MFE -38.48
Consensus MFE -30.02
Energy contribution -32.15
Covariance contribution 2.13
Combinations/Pair 1.10
Mean z-score -2.37
Structure conservation index 0.78
SVM decision value 1.06
SVM RNA-class probability 0.907848
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15589464 117 + 23771897
UUGAAUGGGGGUGUGCGAGUUUUAUGUUUUAUGUUUAUGGCAUAGAACAACCAGAGGCAGCUGCU---GCUGCUGCUCCUGCAGCCCUUGUCAAUUUUUCAGCACUAACUAUUGCUCGAG
((((..((((.((((.((((....((((((((((.....))))))))))......((((((....---)))))))))).)))).))))..))))....((((((........)))).)). ( -41.20)
>DroSec_CAF1 12834 108 + 1
UUGAAUGGGGGUGUGCGAGUUUUAUGUUAUAUGUUUAUGGCAUAGGACAACCAAAGGCAGCUGCU------------GCUGCAGCCCUUGUCAAUUUUUCAGCACUAACUAUUGCUCGAG
(((.(..(((((......(((((((((((((....)))))))))))))........(((((....------------))))).)))))..))))....((((((........)))).)). ( -36.70)
>DroEre_CAF1 12708 120 + 1
UUGAAUGGGGGUGUGCGAGUUUUAUGUUUUGUGUUUAUGGCAUAGGAAAACCAGAGGCAGCUGCUGCUGCUGCUGUUCCUGCAGCCCUUGUCAAUUCUUCAGCACUAACUAUUGCUUGAG
(((.(..(((((.((((.....(((((..((....))..)))))((((...(((.((((((....)))))).))))))))))))))))..))))..(((.((((........)))).))) ( -39.10)
>DroYak_CAF1 13972 117 + 1
UUGAAUGGGGGUGUGCGAGUUUUACGUUUUAUGUUUAUGGCAUAGGACAACCAGAAGCAGCUGCU---GCUGCUGUUCCUGCAGCCCUUGUCAAUUUUUCAGCACUAACUAUUGCUUGAG
(((.(..(((((.((((........(((((((((.....))))))))).......((((((....---)))))).....)))))))))..))))....((((((........))).))). ( -36.90)
>consensus
UUGAAUGGGGGUGUGCGAGUUUUAUGUUUUAUGUUUAUGGCAUAGGACAACCAGAGGCAGCUGCU___GCUGCUGUUCCUGCAGCCCUUGUCAAUUUUUCAGCACUAACUAUUGCUCGAG
(((.(..(((((.(((..(((((((((..((....))..)))))))))....((.((((((.((....)).)))))).))))))))))..))))....((((((........)))).)). (-30.02 = -32.15 +   2.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:56 2006