Locus 57

Sequence ID 3L_DroMel_CAF1
Location 195,263 – 195,365
Length 102
Max. P 0.587935
window80

overview

Window 0

Location 195,263 – 195,365
Length 102
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 82.29
Mean single sequence MFE -34.82
Consensus MFE -19.61
Energy contribution -19.42
Covariance contribution -0.19
Combinations/Pair 1.32
Mean z-score -2.36
Structure conservation index 0.56
SVM decision value 0.11
SVM RNA-class probability 0.587935
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 195263 102 + 23771897
UCUUUGUCGAUGCUUAGCUCAAGCACCGUGUCCUCUUCUACGGACAUGGCUUUAGAGUCCUCAGUAGAGACUGAGUGAUAUUUGGGCUCGCCGCGGGCUCCG
......(((..((..((((((((..((((((((........)))))))).......(((((((((....)))))).))).)))))))).))..)))...... ( -34.70)
>DroPse_CAF1 12668 102 + 1
UCUUUGUCAAUGCUUAGUUCGAGCACAGCAUCCUCUUCUACAGACAUGGCUUUGGAGUCUUCUGUAGAGACGGAGGGGAGUUUAACUUCUCCUCGGACUCCA
((((((((..(((((.....)))))...........((((((((...((((....)))).))))))))))))))))((((((..(.......)..)))))). ( -34.10)
>DroEre_CAF1 11403 102 + 1
UCCUUGUCGAUGCUUAGCUCAAGCACCGUGUCCUCUUCUACGGACAUGGCUUUGGAGUCCUCAGUGGAGACUGAGUGAAAUUUGGGUUCGCCACGGACUCCG
..........(((((.....)))))((((((((........))))))))....(((((((...((((.((((.((......)).))))..))))))))))). ( -38.00)
>DroYak_CAF1 11423 102 + 1
UCCUUGUCAAUGCUUAGCUCAAGCACCGUGUCUUCUUCUACGGACAUGGCUUUGGAGUCCUCAGUGGAGACUGAGUGAAAUUUGGGCUCUCCACGGACUCCG
..........(((((.....)))))((((((((........))))))))....(((((((...(((((((((.((......)).)).)))))))))))))). ( -39.70)
>DroAna_CAF1 11538 102 + 1
UCUUUAUCAAUGCUAAGUUCCAGCACAGUAUCCUCCUCAACGGACAUGGCUUUAGAGUCCUCCGUAGACACAGAUGGAUACUUGGGCUCCCCACGAGCACCA
..........((((.......)))).(((((((((.((.(((((...((((....)))).))))).))....)).)))))))(((((((.....)))).))) ( -28.30)
>DroPer_CAF1 12630 102 + 1
UCUUUGUCAAUGCUUAGUUCGAGCACAGCAUCCUCUUCUACAGACAUGGCUUUGGAGUCUUCUGUAGAGACGGAGGGGAGUUUAACUUCUCCUCGGACUCCA
((((((((..(((((.....)))))...........((((((((...((((....)))).))))))))))))))))((((((..(.......)..)))))). ( -34.10)
>consensus
UCUUUGUCAAUGCUUAGCUCAAGCACAGUAUCCUCUUCUACGGACAUGGCUUUGGAGUCCUCAGUAGAGACUGAGGGAAAUUUGGGCUCUCCACGGACUCCA
.((.((((..(((((.....)))))..(((........))).)))).))...(((((((((((((....)))))((((.........))))...)))))))) (-19.61 = -19.42 +  -0.19) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:13 2006