Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 195,263 – 195,365 |
Length | 102 |
Max. P | 0.587935 |
Location | 195,263 – 195,365 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 82.29 |
Mean single sequence MFE | -34.82 |
Consensus MFE | -19.61 |
Energy contribution | -19.42 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.32 |
Mean z-score | -2.36 |
Structure conservation index | 0.56 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.587935 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 195263 102 + 23771897 UCUUUGUCGAUGCUUAGCUCAAGCACCGUGUCCUCUUCUACGGACAUGGCUUUAGAGUCCUCAGUAGAGACUGAGUGAUAUUUGGGCUCGCCGCGGGCUCCG ......(((..((..((((((((..((((((((........)))))))).......(((((((((....)))))).))).)))))))).))..)))...... ( -34.70) >DroPse_CAF1 12668 102 + 1 UCUUUGUCAAUGCUUAGUUCGAGCACAGCAUCCUCUUCUACAGACAUGGCUUUGGAGUCUUCUGUAGAGACGGAGGGGAGUUUAACUUCUCCUCGGACUCCA ((((((((..(((((.....)))))...........((((((((...((((....)))).))))))))))))))))((((((..(.......)..)))))). ( -34.10) >DroEre_CAF1 11403 102 + 1 UCCUUGUCGAUGCUUAGCUCAAGCACCGUGUCCUCUUCUACGGACAUGGCUUUGGAGUCCUCAGUGGAGACUGAGUGAAAUUUGGGUUCGCCACGGACUCCG ..........(((((.....)))))((((((((........))))))))....(((((((...((((.((((.((......)).))))..))))))))))). ( -38.00) >DroYak_CAF1 11423 102 + 1 UCCUUGUCAAUGCUUAGCUCAAGCACCGUGUCUUCUUCUACGGACAUGGCUUUGGAGUCCUCAGUGGAGACUGAGUGAAAUUUGGGCUCUCCACGGACUCCG ..........(((((.....)))))((((((((........))))))))....(((((((...(((((((((.((......)).)).)))))))))))))). ( -39.70) >DroAna_CAF1 11538 102 + 1 UCUUUAUCAAUGCUAAGUUCCAGCACAGUAUCCUCCUCAACGGACAUGGCUUUAGAGUCCUCCGUAGACACAGAUGGAUACUUGGGCUCCCCACGAGCACCA ..........((((.......)))).(((((((((.((.(((((...((((....)))).))))).))....)).)))))))(((((((.....)))).))) ( -28.30) >DroPer_CAF1 12630 102 + 1 UCUUUGUCAAUGCUUAGUUCGAGCACAGCAUCCUCUUCUACAGACAUGGCUUUGGAGUCUUCUGUAGAGACGGAGGGGAGUUUAACUUCUCCUCGGACUCCA ((((((((..(((((.....)))))...........((((((((...((((....)))).))))))))))))))))((((((..(.......)..)))))). ( -34.10) >consensus UCUUUGUCAAUGCUUAGCUCAAGCACAGUAUCCUCUUCUACGGACAUGGCUUUGGAGUCCUCAGUAGAGACUGAGGGAAAUUUGGGCUCUCCACGGACUCCA .((.((((..(((((.....)))))..(((........))).)))).))...(((((((((((((....)))))((((.........))))...)))))))) (-19.61 = -19.42 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:13 2006