Locus 5698

Sequence ID 3L_DroMel_CAF1
Location 15,588,318 – 15,588,437
Length 119
Max. P 0.923070
window9008

overview

Window 8

Location 15,588,318 – 15,588,437
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 97.57
Mean single sequence MFE -27.00
Consensus MFE -27.00
Energy contribution -27.00
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.36
Structure conservation index 1.00
SVM decision value 1.15
SVM RNA-class probability 0.923070
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15588318 119 + 23771897
AUGCCACUGUACUUGGAAAUGAUGGAGACAUUUCCCUAGCGUAGCGCACACCUCGCAAUUUAACUUU-UUCGAUUUAAAAUGCAAUCUUGCAGCAGGGAUCAAGUAUUUUCUAUAUAUUC
........((((((((....((((....))))(((((.((...(((.......)))...........-............((((....)))))))))))))))))))............. ( -27.00)
>DroSec_CAF1 11662 119 + 1
AUGCCACUGUACUUGGAAAUGAUGGAGACAUUUCCCUAGCGUAGCGCACACCUCGCAAUUUAACUUU-UUCGAUUUACAAUGCAAUCUUGCAGCAGGGAUCAAGUAUUUUCUAUAUAUUC
........((((((((....((((....))))(((((.((...(((.......)))...........-............((((....)))))))))))))))))))............. ( -27.00)
>DroSim_CAF1 11615 119 + 1
AUGCCACUGUACUUGGAAAUGAUGGAGACAUUUCCCUAGCGUAGCGCACACCUCGCAAUUUAACUUU-UUCGAUUUACAAUGCAAUCUUGCAGCAGGGAUCAAGUAUUUUCUAUAUAUUC
........((((((((....((((....))))(((((.((...(((.......)))...........-............((((....)))))))))))))))))))............. ( -27.00)
>DroEre_CAF1 11551 120 + 1
AUGCCACUGUACUUGGAAAUGAUGGAGACAUUUCCCUAGCGUAGCGCACACCUCGCAAUUUCCCUUUUUUCGAUUUAAAAUGCAAUCUUGCAGCAGGGAUCAAGUAUUUUCUUUAUAUUC
........((((((((....((((....))))(((((.((...(((.......)))........................((((....)))))))))))))))))))............. ( -27.00)
>DroYak_CAF1 12807 119 + 1
AUGCCACUGUACUUGGAAAUGAUGGAGACAUUUCCCUAGCGUAGCGCACACCUCGCAAUUUUACUUU-UUGGAUUUAAAAUGCAAUCUUGCAGCAGGGAUCAAGUAUUUUCUAUAUAUUC
........((((((((....((((....))))(((((.((...(((.......)))...........-............((((....)))))))))))))))))))............. ( -27.00)
>consensus
AUGCCACUGUACUUGGAAAUGAUGGAGACAUUUCCCUAGCGUAGCGCACACCUCGCAAUUUAACUUU_UUCGAUUUAAAAUGCAAUCUUGCAGCAGGGAUCAAGUAUUUUCUAUAUAUUC
........((((((((....((((....))))(((((.((...(((.......)))........................((((....)))))))))))))))))))............. (-27.00 = -27.00 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:52 2006