Locus 5697

Sequence ID 3L_DroMel_CAF1
Location 15,587,918 – 15,588,038
Length 120
Max. P 0.860959
window9007

overview

Window 7

Location 15,587,918 – 15,588,038
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 96.75
Mean single sequence MFE -39.20
Consensus MFE -34.06
Energy contribution -34.94
Covariance contribution 0.88
Combinations/Pair 1.06
Mean z-score -1.59
Structure conservation index 0.87
SVM decision value 0.83
SVM RNA-class probability 0.860959
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15587918 120 + 23771897
ACGACGUCCGCGACGCGAGAAGCUGCAGCAAAAGAUUGCUGCUCAGGAGAAGCUACUGAAUGACCUGAAGCGUAGCUUGAGUGCUAUGCCAGAAAUACCUGAGGAGUCAGCGCAGGUCAA
..(((.(((((..(....)..)).(((((((....)))))))...))).......(((..((((((...(((((((......)))))))(((......))).)).))))...)))))).. ( -43.00)
>DroSec_CAF1 11262 120 + 1
ACGACGUCCGCGACGCGAGAAGCUGCAGCAAAAGAUUGCUGCUCAGGAGAAGCUACUGAAUGACCUGAAGCGUAGCUUGAGUGCUAUGCCAGAAAUACCUGAGGAGCCAACGCAGGACAA
.....(((((((.(....)..((((((((((....)))))))(((((((......)).......(((..(((((((......)))))))))).....)))))..)))...))).)))).. ( -42.50)
>DroSim_CAF1 11215 120 + 1
ACGACGUCCGCGACGCGAGAAGCUGCAGCAAAAGAUUGCUGCUCAGGAGAAGCUACUGAAUGACCUGAAGCGUAGCUUGAGUGCUAUGCCAGAAAUACCUGAGGAGCCAACGCAGGACAA
.....(((((((.(....)..((((((((((....)))))))(((((((......)).......(((..(((((((......)))))))))).....)))))..)))...))).)))).. ( -42.50)
>DroEre_CAF1 11151 120 + 1
ACGACGGCCGCGACGCGAGAAGCUGGAGCAAAAGAUUGCUGCUCAGGAGAAGCUACUGAAUGACCUGAAGCGCAGCUUGAGUGCUAUGCCAGAAAUACCCGAGGAGCCAACGCAGGUCAA
.....(((((((.(....)...((((((((.(((.((((.(((((((.....(....).....)))).))))))))))...))))...))))..................))).)))).. ( -35.20)
>DroYak_CAF1 12407 120 + 1
ACGACGCCCGCGACGCGAGAAGCUGGAGCAAAAGAUUGCUGCUCAGGAGAAGCUACUGAAUGACCUGAAGCGCAGCUUGAGUGCUAUGCCAGAAAUACCCGAGGAGCCAACGCAGGUCAA
..(((..((.((.(....)...((((((((.(((.((((.(((((((.....(....).....)))).))))))))))...))))...)))).......)).)).((....))..))).. ( -32.80)
>consensus
ACGACGUCCGCGACGCGAGAAGCUGCAGCAAAAGAUUGCUGCUCAGGAGAAGCUACUGAAUGACCUGAAGCGUAGCUUGAGUGCUAUGCCAGAAAUACCUGAGGAGCCAACGCAGGUCAA
.....(((((((.(....)..((....))........(((.((((((((......)).......(((..(((((((......)))))))))).....)))))).)))...))).)))).. (-34.06 = -34.94 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:51 2006