Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 15,587,678 – 15,587,798 |
Length | 120 |
Max. P | 0.894727 |
Location | 15,587,678 – 15,587,798 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.17 |
Mean single sequence MFE | -40.25 |
Consensus MFE | -36.90 |
Energy contribution | -37.02 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.10 |
Mean z-score | -1.38 |
Structure conservation index | 0.92 |
SVM decision value | 0.98 |
SVM RNA-class probability | 0.894727 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15587678 120 + 23771897 CAAGCGUUUCGCCCGCAAGAUAGAUAUGCGGGUGCACAUGCGCAGGCACACAGGUGAAAAACCCUACAACUGCGAUGCCUGUCAGCGUGGCUACUCGUCGCGUGUAAAUCUAUUGCGCCA ...(((...((((((((.........)))))))((.(((((((((((((.(((.((..........)).))).).)))))))..))))))).....).)))((((((.....)))))).. ( -42.50) >DroSec_CAF1 11022 120 + 1 CAAGCGUUUCGCCCGCAAGAUAGAUAUGCGGGUGCACAUGCGCAGGCAUACAGGUGAAAAACCCUACAACUGCGAUGCCUGUCAGCGUGGCUACUCGUCGCGUGUUAAUCUAUUGCGCCA ...(((...))).((((((((.(((((((((((((.(((((((((((((...(((.............)))...))))))))..))))))).)))...)))))))).))))..))))... ( -43.22) >DroSim_CAF1 10975 120 + 1 CAAGCGUUUCGCUCGCAAGAUAGAUAUGCGGGUGCACAUGCGCAGGCAUACAGGUGAAAAACCCUACAACUGCGAUGCCUGUCAGCGUGGCUACUCGUCGCGUGUUAAUCUAUUGCGCCA ..((((...))))((((((((.(((((((((((((.(((((((((((((...(((.............)))...))))))))..))))))).)))...)))))))).))))..))))... ( -44.02) >DroEre_CAF1 10911 120 + 1 CAAGCGUUUCGCCCGCAAGAUAGAUAUGCGGGUGCACAUGCGCAGACACACAGGUGAAAAACCCUACAACUGCGAUGCCUGUCAGCGUGGCUACUCCUCCCGUGUAAAUCUGUUGCGUCA ...((((..((((((((.........)))))))).....)))).(((.(((((((.....((.........((.((((......)))).))..........))....))))).)).))). ( -36.61) >DroYak_CAF1 12167 120 + 1 CAAGCGUUUCGCCCGCAAGAUUGAUAUGCGGGUACACAUGCGCAGACACACAGGUGAAAAACCCUACAACUGCGAUGCCUGUCAGCGCGGCUACUCCUCCCGUGUAAAUCUGUUGCGUCA ...((((...(((((((.........)))))))....))))((((.......(((.....)))......))))(((((....((((((((.........))))).....)))..))))). ( -34.92) >consensus CAAGCGUUUCGCCCGCAAGAUAGAUAUGCGGGUGCACAUGCGCAGGCACACAGGUGAAAAACCCUACAACUGCGAUGCCUGUCAGCGUGGCUACUCGUCGCGUGUAAAUCUAUUGCGCCA ...((((..((((((((.........)))))))).....)))).(((.....(((.....)))........((((((.......(((((((.....))))))).......))))))))). (-36.90 = -37.02 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:50 2006