Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 15,587,358 – 15,587,478 |
Length | 120 |
Max. P | 0.975185 |
Location | 15,587,358 – 15,587,478 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.33 |
Mean single sequence MFE | -38.34 |
Consensus MFE | -37.30 |
Energy contribution | -37.14 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.08 |
Mean z-score | -1.55 |
Structure conservation index | 0.97 |
SVM decision value | 1.74 |
SVM RNA-class probability | 0.975185 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15587358 120 + 23771897 AAGAUGCGUCUGGUGGAGCAUCAAUUGCGUCAUCGCGCCGAGAAGGCAUACAAAUGCGAUAUCUGUUCAAUGCCACUGGCCACCAAGCAGGAUCUCUCGCUGCACAUGCGUCAUCACAAG ..(((((((..((((..(((.....)))..))))(((.(((((..((((....))))(((.((((((....(((...))).....)))))))))))))).)))..)))))))........ ( -40.30) >DroSec_CAF1 10702 120 + 1 AAGAUGCGUCUGGUGGAGCAUCAAUUGCGUCAUCGCGCUGAAAAGGCAUACAAAUGCGAUAUCUGUUCAAUGCCACUGGCCACCAAGCAGGAUCUCUCGCUGCACAUGCGUCAUCACAAG ..(((((((.((((((((((...(((((((....((.((....))))......)))))))...)))))...(((...)))))))).((((((....)).))))..)))))))........ ( -37.60) >DroSim_CAF1 10655 120 + 1 AAGAUGCGUCUGGUGGAACAUCAAUUGCGUCAUCGCGCCGAGAAGGCAUACAAAUGCGAUAUCUGUUCAAUGCCACUGGCCACCAAGCAGGAUCUCUCGCUGCACAUGCGUCAUCACAAG ..(((((((.((((((((((...(((((((......(((.....)))......)))))))...)))))...(((...)))))))).((((((....)).))))..)))))))........ ( -39.40) >DroEre_CAF1 10591 120 + 1 AAGAUGCGUCUGGUGGAGCAUCAGUUACGUCAUCGCGCCGAGAAGGCAUACAAAUGCGAUAUCUGUUCAAUGCCACUGGCCACCAAGCAGGAUCUCUCGCUGCACAUGCGUCAUCACAAG ..(((((((((((((...))))))..........(((.(((((..((((....))))(((.((((((....(((...))).....)))))))))))))).)))..)))))))........ ( -35.50) >DroYak_CAF1 11847 120 + 1 AAGAUGCGUCUGGUGGAGCAUCAAUUGCGACAUCGCGCUGAAAAGGCAUACAAAUGCGAUAUCUGUUCAAUGCCGCUGGCCACCAAGCAGGAUCUCUCGCUGCACAUGCGUCAUCACAAG ..(((((((.(((((((((.(((..((((....)))).)))...((((((((.(((...))).)))...))))))))..)))))).((((((....)).))))..)))))))........ ( -38.90) >consensus AAGAUGCGUCUGGUGGAGCAUCAAUUGCGUCAUCGCGCCGAGAAGGCAUACAAAUGCGAUAUCUGUUCAAUGCCACUGGCCACCAAGCAGGAUCUCUCGCUGCACAUGCGUCAUCACAAG ..(((((((.((((((((((...(((((((......(((.....)))......)))))))...)))))...(((...)))))))).((((((....)).))))..)))))))........ (-37.30 = -37.14 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:49 2006