| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,585,858 – 15,585,978 |
| Length | 120 |
| Max. P | 0.522215 |
| Location | 15,585,858 – 15,585,978 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 91.17 |
| Mean single sequence MFE | -41.84 |
| Consensus MFE | -34.32 |
| Energy contribution | -36.24 |
| Covariance contribution | 1.92 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.82 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.522215 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15585858 120 - 23771897 CGGAUUCUCCUUGGACAAGCAACUGGGCGCAGGGCUUAAGUUGGCCCAUUUCCAAGGGAUCAAUGAUCAAGGGAGGAGUAACCAUGGGUUCUUCAGCAGCAGCCUUGGUUUUGCCUCGCU ..(((.(.(((((((...((......))...(((((......)))))...)))))))))))........((.((((...(((((.(((((((.....)).))))))))))...)))).)) ( -43.20) >DroSec_CAF1 9167 120 - 1 CGGAUUCUCCUUGGACGAGCAACUGGGCACAGGCCUUAAGUUGGCCCAUUUCCAAGGGAUCAAUGAUCAAGGGAGGAGUAACCAUAGGUUCUUCAGCAGAAGACUUGGUUUUGCCUCGCU ..(((.(.(((((((.(.((((((((((....))))..)))).)).)...)))))))))))........((.((((...(((((..(((.((((....))))))))))))...)))).)) ( -40.80) >DroSim_CAF1 9141 120 - 1 CGGAUUCUCCUUGGACGAGCAACUGGGCACAGGCCUUAAGUUGGCCCACUUCCAAGGGAUCAAUGAUCAAGGGAGGAGUAACCAUGGGUUCUUCAGCAGAAGCCUUGGUUUUGCCUCGCU ..(((.(.(((((((.(.((......))...((((.......))))..).)))))))))))........((.((((...(((((.((.((((.....)))).)).)))))...)))).)) ( -43.80) >DroEre_CAF1 9044 120 - 1 CCGAAUCUCCUUGGACGAGCAACUGGGCACAGGGCUUCAGGCGGCCCAUUUCCAAGGGAUUAAUGAUCAAGGGAGGAGUAAGCAUGGUCUCUUCAACAGAAGCCUUGGCCUUUCCCCGCU ...((((.(((((((...((......))...(((((......)))))...))))))))))).........(((..(((...((..((..(((.....)))..))...)))))..)))... ( -40.30) >DroYak_CAF1 10329 120 - 1 CGGAUUCUCCUUGGACGAGCAACUGGGCACAGGGCUUAAGGCGGCCCAUUUCCAAGGGAUCAAUGACCAAGGGAGGAGUAAUCAUGGUGUCUUCAGCAGAAACCUUGGUUUUGCCUCGCU ..(((.(.(((((((...((......))...(((((......)))))...)))))))))))........((.((((...(((((.(((.(((.....))).))).)))))...)))).)) ( -41.10) >consensus CGGAUUCUCCUUGGACGAGCAACUGGGCACAGGGCUUAAGUUGGCCCAUUUCCAAGGGAUCAAUGAUCAAGGGAGGAGUAACCAUGGGUUCUUCAGCAGAAGCCUUGGUUUUGCCUCGCU ..((.((.(((((((...((......))...(((((......)))))...)))))))))))........((.((((...(((((.((.((((.....)))).)).)))))...)))).)) (-34.32 = -36.24 + 1.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:48 2006