Locus 5692

Sequence ID 3L_DroMel_CAF1
Location 15,582,248 – 15,582,355
Length 107
Max. P 0.737144
window9000

overview

Window 0

Location 15,582,248 – 15,582,355
Length 107
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 75.64
Mean single sequence MFE -31.57
Consensus MFE -19.33
Energy contribution -18.70
Covariance contribution -0.64
Combinations/Pair 1.21
Mean z-score -1.48
Structure conservation index 0.61
SVM decision value 0.44
SVM RNA-class probability 0.737144
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15582248 107 + 23771897
CCUG-------CCAGCUGGCCCUGCCCCAUCUC-CAUGUCCUUGGGGUUGGUAAACACGGCUCCAAAUUGCCGUUUAAAUUUCUCCCCAAUGUCUACGCCC----GGGGCCA-AAGCGGC
...(-------((.((((((((((..(((.(((-((......))))).))).....(((((........)))))..........................)----)))))).-.)))))) ( -38.00)
>DroVir_CAF1 41017 103 + 1
U-----------------CGCUUGUGCCGUGUCCUUUGUCCUUGGGGUUGGUAAACACGGCACCAAAUUGCCGUUUAAAUUUCUCCCCAAUGUGUGCGACCGACUGGGGCCAUGGGCGGC
(-----------------((((..((((.((((..(((..(((((((..(((....((((((......))))))....)))...))))))...)..)))..))).).)).))..))))). ( -36.80)
>DroPse_CAF1 43883 83 + 1
------------------------------UUC-GUUGUCCUUGGGGUUGGUAAACACGGCACCAAAUUGCCGUUUAAAUUUCUCCUCAAUGUCUACGCU-----GGGGGCA-AAGCGGC
------------------------------.((-((((((((..(.((.((....)((((((......))))))...................).)).).-----.))))))-..)))). ( -23.50)
>DroEre_CAF1 5739 101 + 1
CCUG-------CCAGCUG------CCCCAUCUC-CAUGUCCUUGGGGCUGGUAAACACGGCUCCAAAUUGCCGUUUAAAUUUCUCCCCAAUGUCUACGCCC----GGGGCCA-AAGCGGC
...(-------((.((((------((((.....-...(.(.((((((..(((....(((((........)))))....)))...)))))).).).......----)))))..-.)))))) ( -33.76)
>DroAna_CAF1 5029 112 + 1
CCUGGUCCCCUCCAGCUUCAGCU--CCCCUUUC-CUUGUCCUUGGGGUUGGUAAACACGGCACCAAAUUGCCGUUUAAAUUUCUCCCCAAUGUCUACGCCC----GGGGACA-AAGCGGC
(((((......)))((((....(--((((....-...(.(.((((((..(((....((((((......))))))....)))...)))))).).).......----)))))..-)))))). ( -33.84)
>DroPer_CAF1 44046 83 + 1
------------------------------UUC-GUUGUCCUUGGGGUUGGUAAACACGGCACCAAAUUGCCGUUUAAAUUUCUCCUCAAUGUCUACGCU-----GGGGGCA-AAGCGGC
------------------------------.((-((((((((..(.((.((....)((((((......))))))...................).)).).-----.))))))-..)))). ( -23.50)
>consensus
C________________________CCC_UUUC_CUUGUCCUUGGGGUUGGUAAACACGGCACCAAAUUGCCGUUUAAAUUUCUCCCCAAUGUCUACGCCC____GGGGCCA_AAGCGGC
.........................................((((.((((.......)))).))))...(((((((........((((.................))))....))))))) (-19.33 = -18.70 +  -0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:44 2006