Locus 5690

Sequence ID 3L_DroMel_CAF1
Location 15,577,736 – 15,577,831
Length 95
Max. P 0.743238
window8998

overview

Window 8

Location 15,577,736 – 15,577,831
Length 95
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 78.18
Mean single sequence MFE -32.25
Consensus MFE -18.35
Energy contribution -20.68
Covariance contribution 2.33
Combinations/Pair 1.26
Mean z-score -1.83
Structure conservation index 0.57
SVM decision value 0.46
SVM RNA-class probability 0.743238
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15577736 95 + 23771897
UCCAAACGGGCGUAAGGAUAGCGGCAUGGGCGUGGCCUCGAACUUGAGAGGCAUUCGCGAUAUAUCGCCAUGUUGGUUUUUGCGCUAUUA-AAACA
........(((((((((((..(((((((((((..(((((........)))))...)))((....)).)))))))))))))))))))....-..... ( -37.20)
>DroGri_CAF1 37884 96 + 1
ACCAAAUGGACGCAGCGACAGAGGCAUCGGCAAGGCCUCAAAUUUCAACGGCAUACGCGAAUCAUCCGCAUGAAGGUUCUUCCGCUGCAGGGCAGC
.((....))..((((((...(((((.........)))))...(((((..(.....)(((.......))).))))).......))))))........ ( -26.20)
>DroSec_CAF1 1221 95 + 1
UCCAAAGGGGCGUAAGGAUAGUGGCAUGGGCGUGGCCUCGAACUUGAGAGGCAUUCGCGAUAUAUCGCCAUGUUGGUUUUUGCGCUAUUA-ACACA
........(((((((((((...((((((((((..(((((........)))))...)))((....)).))))))).)))))))))))....-..... ( -36.10)
>DroEre_CAF1 1280 95 + 1
UCCAAACGGACGCAACGACAGCGGCAUGGGCGUGGCCUCAAACUUGAGAGGCAUUCGCGAUAUAUCGCCAUGCUGAUUUUUGCGCUAUUA-AAACA
(((....)))(((((.((...(((((((((((..(((((........)))))...)))((....)).)))))))).)).)))))......-..... ( -34.20)
>DroYak_CAF1 1867 95 + 1
UCCAAACGGUCGCAACGACAGCGGCAUGGGCGUGGCCUCAAACUUGAGGGGCAUUCGCGAUAUAUCGCCAUGUUGAUUUUUGCGCUAUUA-AAAAA
.......((.(((((.((...(((((((((((..(((((........)))))...)))((....)).)))))))).)).)))))))....-..... ( -30.50)
>DroMoj_CAF1 42299 95 + 1
ACCAAACGGACGCAGCGAUAGUGGCAUCGGCUGUGCCUCGAAUUUCAACGGCAUCCGCGAAUCGUCGGCAUGGUGAUUUUUCCUCUGUGG-AUGCA
.......((.(((((((((......))).)))))))).............(((((((((((((..(.....)..))))).......))))-)))). ( -29.31)
>consensus
UCCAAACGGACGCAACGACAGCGGCAUGGGCGUGGCCUCAAACUUGAGAGGCAUUCGCGAUAUAUCGCCAUGUUGAUUUUUGCGCUAUUA_AAACA
.......((.(((((..((..(((((((((((..(((((........)))))...)))((....)).))))))))))..))))))).......... (-18.35 = -20.68 +   2.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:42 2006