Locus 5689

Sequence ID 3L_DroMel_CAF1
Location 15,576,102 – 15,576,222
Length 120
Max. P 0.523019
window8997

overview

Window 7

Location 15,576,102 – 15,576,222
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 79.44
Mean single sequence MFE -46.03
Consensus MFE -26.30
Energy contribution -25.43
Covariance contribution -0.87
Combinations/Pair 1.33
Mean z-score -2.02
Structure conservation index 0.57
SVM decision value -0.02
SVM RNA-class probability 0.523019
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15576102 120 - 23771897
CGAGGAAAAUGUACAAGGCACACUGAGAAUGUUGGGCUACGACGCCCAAGCAUCGGGUGACUUGGACUUCCGCGCCUGGUGCGGAAUUGUCUCCUUCGCCGAAAGAUUGGCCCUAGCUGA
.(((((.......((((.(((.((((.....((((((......))))))...))))))).))))(((((((((((...))))))))..)))))))).(((((....)))))......... ( -44.70)
>DroEre_CAF1 38762 120 - 1
CGAGGAAAAUGUGCAAGGCACACUAGGAAUGCUGGGCUACGAUCCCCGAGGAUCGGGAGAUUUGGAUUUCCGCGCCUGGUGCGGAAUUGUCUCCUUCGCCGAAAGAUUGGCUCUAGCUGA
.........(((((...)))))........((((((...((((((....))))))((((((......((((((((...))))))))..))))))...(((((....)))))))))))... ( -44.30)
>DroAna_CAF1 38203 120 - 1
UGAAAAGAACGUCCAAGGCACUCUCAGUGUCUUGGGAUACGAUCUCCAAGGAUGCGGGGAUUUGGAUUUUCGCGCCUGGUGUGGAAUUGUGUCCUUUGCUGAGAGGCUGGCACUGGCAGA
..........(.(((..((.(((((((((....((((((((((.(((((((.((((..(((....)))..)))))))....)))))))))))))).)))))))))....))..))))... ( -49.10)
>consensus
CGAGGAAAAUGUACAAGGCACACUAAGAAUGUUGGGCUACGAUCCCCAAGGAUCGGGAGAUUUGGAUUUCCGCGCCUGGUGCGGAAUUGUCUCCUUCGCCGAAAGAUUGGCACUAGCUGA
................(((.........((((((((........))).)))))..((((((......((((((((...))))))))..))))))...))).........((....))... (-26.30 = -25.43 +  -0.87)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:41 2006