| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,569,641 – 15,569,755 |
| Length | 114 |
| Max. P | 0.981629 |
| Location | 15,569,641 – 15,569,755 |
|---|---|
| Length | 114 |
| Sequences | 3 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 94.77 |
| Mean single sequence MFE | -34.97 |
| Consensus MFE | -33.65 |
| Energy contribution | -33.43 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.03 |
| Mean z-score | -4.59 |
| Structure conservation index | 0.96 |
| SVM decision value | 1.89 |
| SVM RNA-class probability | 0.981629 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15569641 114 + 23771897 UAAUUCAAAUGUUCUUGUUUCGAGUAUUUGGGGUAUUCGUGGUAAAGUUAAGCUGGAUUAAGGAUUCUCUUUCUUCAUCUUUAUUUUGCGGUGAAUACCCUGC-AAUAUUCUAUC .....................(((((((((((((((((((.(((((((.(((.((((..((((....))))..)))).))).))))))).)))))))))))).-))))))).... ( -34.20) >DroEre_CAF1 32361 114 + 1 UAAUUAAAAUGGUCUUGUUUAGAGUAUUUGGGGUAUUCGUGGUAAAGUUAAGCUGGAUUAAGGAUUUUCUUUCUUCAUCUUUAUUUUGCGGUGAAUACCCUGU-AAUAUUCUCUC ....................((((((((((((((((((((.(((((((.(((.((((..((((....))))..)))).))).))))))).)))))))))))).-))))))))... ( -34.40) >DroYak_CAF1 51980 115 + 1 UAAUUAAAAUGUUCUUGUUUAGAGUAUUCGGGGUAUUCGUGGUAAAGUUAAGCUGGACUAAGGAUUUUCUUUCUUCAUCUUUAUUUUGCGGUGAAUACCCUGUGAAUAUUCUCUC ....................((((((((((((((((((((.(((((((.(((.((((..((((....))))..)))).))).))))))).)))))))))))..)))))))))... ( -36.30) >consensus UAAUUAAAAUGUUCUUGUUUAGAGUAUUUGGGGUAUUCGUGGUAAAGUUAAGCUGGAUUAAGGAUUUUCUUUCUUCAUCUUUAUUUUGCGGUGAAUACCCUGU_AAUAUUCUCUC .....................(((((((((((((((((((.(((((((.(((.((((..((((....))))..)))).))).))))))).))))))))))))..))))))).... (-33.65 = -33.43 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:34 2006