Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 15,565,266 – 15,565,425 |
Length | 159 |
Max. P | 0.998780 |
Location | 15,565,266 – 15,565,385 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 75.93 |
Mean single sequence MFE | -29.84 |
Consensus MFE | -16.96 |
Energy contribution | -18.80 |
Covariance contribution | 1.84 |
Combinations/Pair | 1.12 |
Mean z-score | -2.86 |
Structure conservation index | 0.57 |
SVM decision value | 3.22 |
SVM RNA-class probability | 0.998780 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15565266 119 - 23771897 UGUGUGGGCUACAUUGUAGAUUGCAGAUUUCAUAAAUAUUUGUUGAGAUCUGUUAUCAUAGCGAAAUAAAUCGUUGUCAGCUCUUUGAGCUGGCAUAGCAUUUGUUUGUUACUCAUGCU .(((((((..........(((.((((((((((...........)))))))))).))).((((.((((((((.(((((((((((...)))))))))..))))))))))))))))))))). ( -41.20) >DroSec_CAF1 27619 108 - 1 -----------GAUUGUAGAUUGUAGAUUUCAUAAAUAUUUGUUGAGAUCUGUUAUCAUAGCGAAAUAAAUCGUUGUCAGCUCUUUGAGCUGCCUUAGCAAUUGUUUGUUACUCAUGCU -----------....((((((..(((((((((...........)))))))))..))).(((((((...(((.((((.((((((...))))))...)))).))).)))))))....))). ( -27.40) >DroSim_CAF1 28092 102 - 1 UGUGUGGGCUAGAUUGUAGAUUGUAGAUUUCAUAAAUAUUUGUUGAGAUCUGUUAUCAUAGCGAAAUAAAUCGUUGUCAGCUCUU-----------------UGUUUGUUACUCAUGCU .(((((((..........(((..(((((((((...........)))))))))..)))(((((((......)))))))........-----------------.........))))))). ( -23.50) >DroEre_CAF1 27908 108 - 1 UAUGUGGGCU-------AGAUUGCAGAUUUUAUAAAUAUUGGUUGAGAUCUGUUAUCAUAGCGAGAUAAAUCGUUGUCAGCUUUUUGAGCUGGCACAGCAAU----UGUUACUCAUGCC .....(((((-------((((.((((((((((...........)))))))))).))).))))(((...(((.(((((((((((...)))))))))..)).))----)....)))...)) ( -32.40) >DroYak_CAF1 48143 101 - 1 UGUGUGGGCCAGAUUGUAGAUUGUAGAUUUCAUAAAUAUUGGCUGAGAUCUGUUAUCAUAGCGAAAUAAAGCAAUA--------------AAGCAAAGCAAU----UGUUACUCAUGCU .(((((((...((((((.(((..(((((((((...........)))))))))..)))...((........))....--------------.......)))))----)....))))))). ( -24.70) >consensus UGUGUGGGCUAGAUUGUAGAUUGUAGAUUUCAUAAAUAUUUGUUGAGAUCUGUUAUCAUAGCGAAAUAAAUCGUUGUCAGCUCUUUGAGCUGGCAUAGCAAUUGUUUGUUACUCAUGCU .(((((((..........(((..(((((((((...........)))))))))..)))(((((((......)))))))..................................))))))). (-16.96 = -18.80 + 1.84)
Location | 15,565,306 – 15,565,425 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 85.99 |
Mean single sequence MFE | -26.88 |
Consensus MFE | -18.60 |
Energy contribution | -19.60 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.16 |
Mean z-score | -1.65 |
Structure conservation index | 0.69 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.622620 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15565306 119 - 23771897 AAUUUAAUUGUCUUACAGCGUGACAAACUUUUUCUCUACAUGUGUGGGCUACAUUGUAGAUUGCAGAUUUCAUAAAUAUUUGUUGAGAUCUGUUAUCAUAGCGAAAUAAAUCGUUGUCA .......(((((.........)))))........((((((((((.....)))).))))))..((((((((((...........))))))))))....(((((((......))))))).. ( -27.40) >DroSim_CAF1 28115 119 - 1 AAUUUUAUUGUCUUACAGCGUGACAAUCUUUUUCUGUACAUGUGUGGGCUAGAUUGUAGAUUGUAGAUUUCAUAAAUAUUUGUUGAGAUCUGUUAUCAUAGCGAAAUAAAUCGUUGUCA ..............((((((..(((((((...((..((....))..))..))))))).(((..(((((((((...........)))))))))..)))..............)))))).. ( -27.20) >DroEre_CAF1 27944 112 - 1 AAUUUUAUUAUCUUACAGAGUGGCAAUCCUUUGCUGUACAUAUGUGGGCU-------AGAUUGCAGAUUUUAUAAAUAUUGGUUGAGAUCUGUUAUCAUAGCGAGAUAAAUCGUUGUCA .......(((((((...(.(..((((....))))..).)........(((-------((((.((((((((((...........)))))))))).))).))))))))))).......... ( -28.90) >DroYak_CAF1 48168 116 - 1 AAUUUUAUUGUCUUACAGAGUGACGAUCGUUUUCUGUACUUGUGUGGGCCAGAUUGUAGAUUGUAGAUUUCAUAAAUAUUGGCUGAGAUCUGUUAUCAUAGCGAAAUAAAGCAAUA--- .....(((((..(((....((.((((((....((..((....))..))...)))))).(((..(((((((((...........)))))))))..)))...))....)))..)))))--- ( -24.00) >consensus AAUUUUAUUGUCUUACAGAGUGACAAUCUUUUUCUGUACAUGUGUGGGCUAGAUUGUAGAUUGCAGAUUUCAUAAAUAUUGGUUGAGAUCUGUUAUCAUAGCGAAAUAAAUCGUUGUCA ...........((((((.(((((((.........))).))))))))))..........(((..(((((((((...........)))))))))..)))(((((((......))))))).. (-18.60 = -19.60 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:32 2006