Locus 5682

Sequence ID 3L_DroMel_CAF1
Location 15,565,080 – 15,565,195
Length 115
Max. P 0.779816
window8986

overview

Window 6

Location 15,565,080 – 15,565,195
Length 115
Sequences 3
Columns 115
Reading direction reverse
Mean pairwise identity 87.84
Mean single sequence MFE -29.10
Consensus MFE -24.44
Energy contribution -24.55
Covariance contribution 0.11
Combinations/Pair 1.04
Mean z-score -2.12
Structure conservation index 0.84
SVM decision value 0.55
SVM RNA-class probability 0.779816
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15565080 115 - 23771897
CCUGUUACCCAUCAAAAUCAUCGCCUGGCCAAGCGGAGCCGGCAAAGAAAGUCAGAGCAGCUCAAACUCAGCUCAGUUAAGUUCAGCUCAGAGCUCCCCUGUUCACACUUUCAUU
......................(((.(((........))))))...((((((..((((((.........(((((((((......))))..)))))...))))))..))))))... ( -27.30)
>DroSec_CAF1 27444 99 - 1
CCUGUUACCCAUCAAAAUCAUCGCCUGGCCAAGCGGAGCCGGCAAAGAAAGUCAAAGCAGAGC----------------AGCUCAGCUCAGAGCUCCCCUGUUCACACUUUCAUU
......................(((.(((........))))))...((((((...(((((.(.----------------(((((......))))).).)))))...))))))... ( -28.40)
>DroSim_CAF1 27917 99 - 1
CCUGUUACCCAUCAAAAUCAUCGCCUGGCCAAGCGGAGCCGGCAAAGAAAGUCAGAGCAGAGC----------------AGCUCAGCUCAGAGCUCCCCUGUUCACACUUUCAUU
......................(((.(((........))))))...((((((..((((((.(.----------------(((((......))))).).))))))..))))))... ( -31.60)
>consensus
CCUGUUACCCAUCAAAAUCAUCGCCUGGCCAAGCGGAGCCGGCAAAGAAAGUCAGAGCAGAGC________________AGCUCAGCUCAGAGCUCCCCUGUUCACACUUUCAUU
......................(((.(((........))))))...((((((..((((((...................(((((......)))))...))))))..))))))... (-24.44 = -24.55 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:30 2006