Locus 5680

Sequence ID 3L_DroMel_CAF1
Location 15,564,281 – 15,564,388
Length 107
Max. P 0.793666
window8983

overview

Window 3

Location 15,564,281 – 15,564,388
Length 107
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 78.93
Mean single sequence MFE -27.72
Consensus MFE -11.97
Energy contribution -13.21
Covariance contribution 1.24
Combinations/Pair 1.16
Mean z-score -2.17
Structure conservation index 0.43
SVM decision value 0.59
SVM RNA-class probability 0.793666
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15564281 107 - 23771897
AAGUGAGGAAAUUAGCCAAGACAAC-------------CAACCAGCAUGAACUGUCGUCACAAGUGGAGAAAUCCAUCCAAAGUGGCAAAGUGAGAGGUGGGUACCUCAAAUGCUGUAAA
......((.......))........-------------....((((((..(((...(((((..(((((....))))).....)))))..)))..(((((....)))))..)))))).... ( -28.20)
>DroSec_CAF1 26687 94 - 1
AAGUGAGGAAAUUAGCCAAGACAAG-------------CAACCCGCAUGAACUGUCGUCACAAGUGGAGAAAUC----CAAAGUGGCAAACUGAGAGGUGGGUACCACAAA---------
..(((.........((........)-------------).((((((..((....))(((((...((((....))----))..)))))..........))))))..)))...--------- ( -26.50)
>DroSim_CAF1 27152 94 - 1
AAGUGAGGAAAUUAGCCAAGACAAC-------------CAGCCCGCAUGAACUGUCGUCACAAGUGGAGAAAUC----CAAAGUGGCAAACUGAGAGGUGGGUACCUCAAA---------
...(((((...........(.....-------------).((((((..((....))(((((...((((....))----))..)))))..........)))))).)))))..--------- ( -28.30)
>DroEre_CAF1 26961 113 - 1
AAGUGAAGAAAUUAGCCAAGACGACUUCUACGACGAUGGAGCCCGCAUGAACUGU---CACAAAUGGAGAAAUC----CUAAGUGGCAAACUGAGAGGUGGGCACCUUAAAUGCUGUAAA
............((((..(((.....)))........((.((((........(((---(((....(((....))----)...)))))).(((....))))))).))......)))).... ( -28.30)
>DroYak_CAF1 47206 113 - 1
AAGUGAAGAAAUUAGCCAACACAACUUCUACGACGAUGGAACCCGCAUGAACUGU---CACAACUGGAGAAAUC----CAAAGUGGCGAAGUGAGAGGUUGGUACCUCAAAUGCUGUAAA
............((((.......(((((...(.((........))).......((---(((...((((....))----))..))))))))))..(((((....)))))....)))).... ( -27.30)
>consensus
AAGUGAGGAAAUUAGCCAAGACAAC_____________CAACCCGCAUGAACUGUCGUCACAAGUGGAGAAAUC____CAAAGUGGCAAACUGAGAGGUGGGUACCUCAAAUGCUGUAAA
...(((((......(......)..................((((((..........(((((.....((....))........)))))..........)))))).)))))........... (-11.97 = -13.21 +   1.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:27 2006