Locus 568

Sequence ID 3L_DroMel_CAF1
Location 1,635,474 – 1,635,570
Length 96
Max. P 0.857717
window867

overview

Window 7

Location 1,635,474 – 1,635,570
Length 96
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 75.28
Mean single sequence MFE -44.40
Consensus MFE -25.29
Energy contribution -26.47
Covariance contribution 1.18
Combinations/Pair 1.48
Mean z-score -1.79
Structure conservation index 0.57
SVM decision value 0.81
SVM RNA-class probability 0.857717
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1635474 96 + 23771897
UC-CGGAAGUUGUCGGUGAUGAUGGAGCUGGUGGCUGUGAGUCAGGCUC-CGGCUGGUAGGGCGCUGGAGCAGCUGCUCCCGCGGCGUCCUCCGGCGA
.(-(((......))))......(((((((..((((.....)))))))))-))(((((.(((((((((((((....)))))...))))))))))))).. ( -48.00)
>DroPse_CAF1 9393 75 + 1
AU-UGGAU---GUCGGUGACGACGGAGUGGGCGGUUGCA---CCGGUUC-GGGCUGGAAGGCUGC---------GGCU------UCAUUUUCGGGUGG
((-(.((.---((((....))))(((((.(.(((((...---(((((..-..)))))..))))))---------.)))------))....)).))).. ( -28.60)
>DroSec_CAF1 6456 98 + 1
UCCCGGAAGUCGUCGGCGAUGAUGGAGCAGGUGGCUGUGAGUCAGGCUCCCGGCUGGUAAGGCGCUGGAGCAGCUGCUCCCGCGGCAUCCUCCGGCGA
((((((((((((..(((..((((...((((....))))..)))).)))..)))))((...(.(((.(((((....))))).))).)..))))))).)) ( -45.30)
>DroSim_CAF1 6391 96 + 1
UC-CGGAAGUCGUCGGCGAUGAUGGAGCAGGUGGCUGUGAGUCAGGCUC-CGGCUGGUAGGGCGCUGGAGCAGCUGCUCCCGCGGCGUCCUCCGGCGA
.(-((((.(.(((((.((.....(((((((.((((.....)))).((((-((((.........))))))))..)))))))))))))).).)))))... ( -48.10)
>DroEre_CAF1 6404 93 + 1
UC-CGGAAGUAGUCGGUGAUGAUGGAGCAGGUUGCUGCGCGUCUGGAUC-CGGCUGAUAGGGCGCAGGAGCUACUGCUCCUG---CGUCCUCAGGCGA
((-((((.((.((((....))))...((((....)))))).))))))..-((.((((..((((((((((((....)))))))---))))))))).)). ( -49.40)
>DroYak_CAF1 6337 96 + 1
UC-CGGAAGCCGUUGGAUAUGAUGGAGCAGGGGGCUGCGCGUCUGGCUC-CGGCUGGUAGGGCGCAGGAGCAGCUGCUCCCGCGGCGUCCUCUGGCGA
..-((((.((((........((((..((((....)))).))))))))))-))((..(.(((((((.(((((....)))))....))))))))..)).. ( -47.00)
>consensus
UC_CGGAAGUCGUCGGUGAUGAUGGAGCAGGUGGCUGCGAGUCAGGCUC_CGGCUGGUAGGGCGCUGGAGCAGCUGCUCCCGCGGCGUCCUCCGGCGA
...((((..((((((....)))))).((((....)))).........)).))(((((.(((((((.(((((....)))))....)))))))))))).. (-25.29 = -26.47 +   1.18)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:30 2006