Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 15,562,447 – 15,562,541 |
Length | 94 |
Max. P | 0.878780 |
Location | 15,562,447 – 15,562,541 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 79.78 |
Mean single sequence MFE | -22.83 |
Consensus MFE | -13.21 |
Energy contribution | -12.94 |
Covariance contribution | -0.27 |
Combinations/Pair | 1.39 |
Mean z-score | -2.33 |
Structure conservation index | 0.58 |
SVM decision value | 0.91 |
SVM RNA-class probability | 0.878780 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15562447 94 + 23771897 AUGUAAACCAUUGA---------AGUACAUA------------UGUACAUAAGGAAACUCAAUUAUCUUGUGUGUGAUAUUUCACUUAUCACAUAC-----GCAGACCUCGACAAUCGGC .......((((((.---------.((((...------------.))))...((....))......((((((((((((((.......))))))))))-----).)))......)))).)). ( -23.50) >DroSec_CAF1 24931 94 + 1 AUGUAAACCAUUGA---------AGUACAUA------------UGUACAUAAGGAAACUCAAUUAUCUUGUGUGUGAUAUUUCACUUAUCACAUAC-----GCAGACCUCGACAGUCGGC .......((((((.---------.((((...------------.))))...((....))......((((((((((((((.......))))))))))-----).)))......)))).)). ( -23.50) >DroSim_CAF1 25405 96 + 1 AUGUAAACCAUUGA---------AGUACAUA------------UGUACAUAAGGAAACUCAAUUAUCUUGUGUGUGAUAUUUCACUUAUCACAUACG---CGCAGACCUCGACAGUCGGC ..((.....(((((---------.((((...------------.))))....(....))))))......((((((((((.......)))))))))))---)((.(((.......))).)) ( -23.00) >DroEre_CAF1 25224 94 + 1 AUGUAGACCAUUGA---------AGUACAUA------------UGUGUAAAAGAAAACUCAAUUAUCUUGUGUGUGAUAUUUCACUUAUCACAUAC-----ACAGACCUCGACAGUCGGC .....(((..((((---------..((((..------------..))))................((((((((((((((.......))))))))))-----).)))..))))..)))... ( -21.80) >DroYak_CAF1 45414 106 + 1 AUGUAAACCAUUGA---------AGUACAUAUGUAUGUACAUAUGUAUAUAGGGAAACUCAAUUAUCUUGUGUGUGAUAUUUCACUUAUCACAUAC-----ACAGACCUCGACAGUCGGC .......((((((.---------.((((((((((....))))))))))...((....))......((((((((((((((.......))))))))))-----).)))......)))).)). ( -30.20) >DroAna_CAF1 25902 100 + 1 A-----ACUGUUCAAUGGCUUUCAACUCAGA------------UGUGUGUAAGGAAACUCAAUUAUCUCGUGUAUGAUAUUUCACUUAUCACUCUUGCCCCCCAGACCUC---AGACGCU .-----.(((.....(((....((....(((------------.(((.(((((((((......((((........)))))))).)))))))))))))....))).....)---))..... ( -15.00) >consensus AUGUAAACCAUUGA_________AGUACAUA____________UGUACAUAAGGAAACUCAAUUAUCUUGUGUGUGAUAUUUCACUUAUCACAUAC_____GCAGACCUCGACAGUCGGC .......((((((...........(((((..............)))))...((....))..........((((((((((.......))))))))))................)))).)). (-13.21 = -12.94 + -0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:21 2006