| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,561,390 – 15,561,492 |
| Length | 102 |
| Max. P | 0.593008 |
| Location | 15,561,390 – 15,561,492 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.28 |
| Mean single sequence MFE | -18.32 |
| Consensus MFE | -11.29 |
| Energy contribution | -12.29 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.593008 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15561390 102 - 23771897 UACUGAGAUCUUAACUGAUCAUUAAUAUAAUUUA---------UCAGUUAACAGCGUGUCAUGUUUAGCAUUUG------CAUUUGGAAGUAUGACUUCCCCUAUUCUAAAAUGUCU--- .(((((.((.(((((((((.((((...))))..)---------))))))))....)).))).))...((((((.------.....(((((.....))))).........))))))..--- ( -16.66) >DroSec_CAF1 23931 108 - 1 UACUUAGAUCUUAACUGAUCAUUAAUAUAAUUUA---------UCAGUUAACAUCGUGUCAUGUUUAGCAUUUGCAUUUGCAUUUGCAAGUAUGACUUCCCCUAUUCUAAAAUGUUU--- ......(((.(((((((((.((((...))))..)---------)))))))).)))..(((((((((.(((..(((....)))..)))))))))))).....................--- ( -25.20) >DroSim_CAF1 24407 105 - 1 UACUUAGAUCUUAACUGAUCAUUAAUAUAAUUUA---------UCAGUUGACAUCGUGUCAUGUUUAGCAUUUG------CAUUUGCAAGUAUGACUUCCCCUAUUCUAAAAUGUCUUCU ......(((.(((((((((.((((...))))..)---------)))))))).)))..(((((((((.(((....------....))))))))))))........................ ( -19.70) >DroEre_CAF1 24208 109 - 1 UACU--GAUCUUAACUGAACACUAAUACAAUUUAUACAAUAUGUCAGUAAAUAUCGUGUCAUGUUAGGCAUUUC------CAUUUGGAUAUAUGACUUCCCCUAAUUUAAAAUGUCU--- ....--(((.((.(((((.((....................))))))).)).)))..(((((((........((------(....))).))))))).....................--- ( -12.75) >DroYak_CAF1 44382 96 - 1 UAAU--GAUCUUAACUGACCGUUAAUAUAAUUUA---------UCAGUUAAUAUCGCGUCAUGUUAAGCAUUUU------CAUUUGGAUAUAUGACUUCCCAUAUUUUCA----UCU--- .(((--((.((((((((((((......((((...---------...))))....)).)))).)))))).....)------))))((((.(((((......))))).))))----...--- ( -17.30) >consensus UACU_AGAUCUUAACUGAUCAUUAAUAUAAUUUA_________UCAGUUAACAUCGUGUCAUGUUUAGCAUUUG______CAUUUGGAAGUAUGACUUCCCCUAUUCUAAAAUGUCU___ ......(((.((((((((.........................)))))))).)))..((((((((...((..(((....)))..))..))))))))........................ (-11.29 = -12.29 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:20 2006