Locus 5676

Sequence ID 3L_DroMel_CAF1
Location 15,560,966 – 15,561,072
Length 106
Max. P 0.975855
window8974

overview

Window 4

Location 15,560,966 – 15,561,072
Length 106
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 90.93
Mean single sequence MFE -18.73
Consensus MFE -16.54
Energy contribution -16.58
Covariance contribution 0.04
Combinations/Pair 1.04
Mean z-score -1.78
Structure conservation index 0.88
SVM decision value 1.76
SVM RNA-class probability 0.975855
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15560966 106 - 23771897
CCUGAUUACACUCGACAUCCCAUUGUUUGUUUCUAUCUCGGUGAUCAAUCAUGAACAUCAGAUAAUAAAUUUAC---UUCUCUGAUGUAAGAAUUUCACCAGAACAAUG
...((..(((...((((......))))))).))..(((.((((((((....)))((((((((............---...)))))))).......))))))))...... ( -19.46)
>DroSec_CAF1 23507 106 - 1
CCUGAUUACACUCGACAUCCCAUUGUUUGUUUCUAUCUCGGUGAUCAAUCAUCAACAUCAGAUAAUAAAUUUAC---UUCUCUGAUGUAAGAAUUUCACCAGAACAAUU
...((..(((...((((......))))))).))..(((.(((((....((....((((((((............---...))))))))..))...))))))))...... ( -18.76)
>DroSim_CAF1 23983 106 - 1
CCUGAUUACACUCGACAUCCCAUUGUUUGUUUCUAUCUCGGUGAUCAAUCAUCAACAUCAGAUAAUAAAUUUAC---UGCUCUGAUGUAAGAAUUUCACCAGAACAAUU
...((..(((...((((......))))))).))..(((.(((((....((....((((((((............---...))))))))..))...))))))))...... ( -18.76)
>DroEre_CAF1 23785 106 - 1
CCUGAAUACACUCGACAUCCCAUUGUUUGUUUCUAUCGCGGUGAUCCAUUAUGAACAUCAGAUAAUACAUUUACUUCUACUCUGAUGUAAGAAUUUUACCAGAA---GG
((((((.(((...((((......))))))))))..((..(((((...(((....((((((((..................))))))))...))).))))).)))---)) ( -17.67)
>DroYak_CAF1 43955 109 - 1
CCUGAUUACACUCGACAUCCCAUUGUUUGUUUCUAUCGCGGUGAUCAAUCAUGAACAUCAGACAAUAAAUUCAAUUCUUCUCUGAUGUAAAAAUUUCACCAGAACAACG
...(((.(((...((((......)))))))....)))..((((((((....)))((((((((.((.((......)).)).)))))))).......)))))......... ( -19.00)
>consensus
CCUGAUUACACUCGACAUCCCAUUGUUUGUUUCUAUCUCGGUGAUCAAUCAUGAACAUCAGAUAAUAAAUUUAC___UUCUCUGAUGUAAGAAUUUCACCAGAACAAUG
...(((.(((...((((......)))))))....)))..(((((..........((((((((..................)))))))).......)))))......... (-16.54 = -16.58 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:19 2006