Locus 5674

Sequence ID 3L_DroMel_CAF1
Location 15,560,173 – 15,560,293
Length 120
Max. P 0.886294
window8972

overview

Window 2

Location 15,560,173 – 15,560,293
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 93.00
Mean single sequence MFE -26.56
Consensus MFE -22.34
Energy contribution -21.90
Covariance contribution -0.44
Combinations/Pair 1.11
Mean z-score -1.61
Structure conservation index 0.84
SVM decision value 0.94
SVM RNA-class probability 0.886294
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15560173 120 - 23771897
CAAAGUCGAAUGGAUACUACUGAGGUGGCAGUCGAUAAAACAAAGACAGAAUUAGCAAGCCCAUUGAGGUAUUUGCUGUUCUACUUCGAAUUCUACAACAAAUAGUAGAUAUACGAAAUU
....(((((.((..((((.....)))).)).)))))...........(((((.((((((((......)))..))))))))))..((((...(((((........)))))....))))... ( -26.00)
>DroSec_CAF1 22726 120 - 1
CAAAGUCGAAUGGAUACUCCUGAGGUGGCAGUCGAUAAAACAAAGACAGAAUUAGCAAGCCCAUUGAGGUAUUUGCUGUUCUACUUCGAAUUCUACAACAAAUAGUAGAUAUAAGAAAUU
....(((((.((..((((.....)))).)).)))))...........(((((.((((((((......)))..))))))))))..(((....(((((........))))).....)))... ( -24.20)
>DroSim_CAF1 23202 120 - 1
CAAAGUCGAAUGGAUACUCCUGAGGUGGCAGUCGAUAAAACAAAGACAGAAUUAGCAAGCCCAUUGAGGUAUUUGCUGUUCUACUUCGAAUUCUACAACAAAUAGUAGAUAUACGAAAUU
....(((((.((..((((.....)))).)).)))))...........(((((.((((((((......)))..))))))))))..((((...(((((........)))))....))))... ( -25.70)
>DroEre_CAF1 23023 120 - 1
CAAAGUCAAAUGGAUACUCCUGAGGUGGCAGUCGAUAAAACAAAGACAGAAUUAGCCAACCCAUUGAGGUAUUUGCUGCUCUACCUCGAAUUCUACAACAAAUAGUAGAUUUCCACAAUA
...........((.....)).(((((((..(((...........))).....((((..(((......)))....))))..)))))))(((.(((((........))))).)))....... ( -25.00)
>DroYak_CAF1 43120 119 - 1
CAAAGUCGAAUGGAUACUCCUGAGGUGGCAGUCGAUAAGACAAAGACAGAAUUAGCAAAUCCAUGGAGGUAUUUGCUGUUCUACCUCGAAAUCUACAACAAAUAGUAGAU-ACGAAAAUA
.....(((...((.....))((((((((..(((.....)))...........((((((((((.....)).))))))))..))))))))..((((((........))))))-.)))..... ( -31.90)
>consensus
CAAAGUCGAAUGGAUACUCCUGAGGUGGCAGUCGAUAAAACAAAGACAGAAUUAGCAAGCCCAUUGAGGUAUUUGCUGUUCUACUUCGAAUUCUACAACAAAUAGUAGAUAUACGAAAUU
....(((.....))).....((((((((..(((...........))).....(((((((((......)))..))))))..))))))))...(((((........)))))........... (-22.34 = -21.90 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:17 2006