Locus 5671

Sequence ID 3L_DroMel_CAF1
Location 15,558,834 – 15,558,936
Length 102
Max. P 0.995176
window8966

overview

Window 6

Location 15,558,834 – 15,558,936
Length 102
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 92.67
Mean single sequence MFE -27.72
Consensus MFE -22.80
Energy contribution -22.64
Covariance contribution -0.16
Combinations/Pair 1.12
Mean z-score -2.57
Structure conservation index 0.82
SVM decision value 2.55
SVM RNA-class probability 0.995176
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15558834 102 - 23771897
GAAGUUAAACGAAAGAGCAACAGGCGUUGGAAAAAGCUCGCGAAAGCUCU-UUUUCAGCCAGGCAACAAGUUGCGAAUAACAGGACUAACGGCAGAGAGAGAG
(..((((..(....).(((((.(((....(((((((...((....)).))-))))).))).(....)..)))))............))))..).......... ( -28.50)
>DroSec_CAF1 21440 100 - 1
GAAGUUAAACGAAAGAGCAACAGGCGUUGGAAAAAGCUCGCGAAAGCUCU-UUUUCAGUCAGGCAACAAGUUGCGAAUAACAGGACUAACGGCAAAGA--GAG
(..((((..(....).(((((.(((....(((((((...((....)).))-))))).))).(....)..)))))............))))..).....--... ( -25.80)
>DroSim_CAF1 21899 100 - 1
GAAGUUAAACGAAAGAGCAACAGGCGUUGGAAAAAGCUCGCGAAAGCUCU-UUUUCAGUCAGGCAACAAGUUGCGAAUAACAGGACUAACGGCAAAGA--GAG
(..((((..(....).(((((.(((....(((((((...((....)).))-))))).))).(....)..)))))............))))..).....--... ( -25.80)
>DroEre_CAF1 21558 98 - 1
UAAGUCAAACGGAAGAGCAACAGGCGUUGGAAAAAGCUUGCGAAAGCUCU-UUUUCAGCAAGGCAACAAGUUGCGAAUAACAGGACUCACGGCAGAG----AG
..((((...(....).(((((....((((((((((((((....))))).)-))))))))..(....)..))))).........))))..........----.. ( -28.00)
>DroYak_CAF1 41605 98 - 1
GAAGUUAAACGGAAGAGCAACAGGCGUUGGAA-AAGCUUGCGAAAGCUUUUUUUUCAGCCAGGCAACAAGUUGCGAAUAACAGGACUCACGGCAGAG----AG
...((((..(....).(((((.(((...((((-((((((....))))))))))....))).(....)..)))))...))))....(((......)))----.. ( -30.50)
>consensus
GAAGUUAAACGAAAGAGCAACAGGCGUUGGAAAAAGCUCGCGAAAGCUCU_UUUUCAGCCAGGCAACAAGUUGCGAAUAACAGGACUAACGGCAGAGA__GAG
..((((...(....).(((((.(((..((((((.((...((....)).)).))))))))).(....)..))))).........))))................ (-22.80 = -22.64 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:11 2006