Locus 5670

Sequence ID 3L_DroMel_CAF1
Location 15,558,623 – 15,558,735
Length 112
Max. P 0.786065
window8965

overview

Window 5

Location 15,558,623 – 15,558,735
Length 112
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 95.18
Mean single sequence MFE -23.12
Consensus MFE -21.20
Energy contribution -21.16
Covariance contribution -0.04
Combinations/Pair 1.12
Mean z-score -1.26
Structure conservation index 0.92
SVM decision value 0.57
SVM RNA-class probability 0.786065
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15558623 112 - 23771897
GCCGUGUUUGUAAUUUACACAAAACAAAACGGCAAGAAAAACAAUACACAAUUCAUUUGCACAAACGUACGCUUGUUCAUAUGUAGGUACGAUUGUGGAUAUUUUCGGACUA
(((((.(((((.......))))).....)))))..(((((........(((.....)))(((((.(((((.((...........))))))).)))))....)))))...... ( -24.30)
>DroSec_CAF1 21229 112 - 1
GCUGUGUUUGUAAUUUACACAAAACAAAACGGCAAGAAAAACAAUACACAAUUCAUUUGCACAAACGUACGCUUGUUCAUAUGUAGGUACGAUUGUGGAUAUUUUUGGACUA
(((((.(((((.......))))).....)))))...............(((......(.(((((.(((((.((...........))))))).))))).).....)))..... ( -20.90)
>DroSim_CAF1 21688 112 - 1
GCUGUGUUUGUAAUUUACACAAAACAAAACGGCAAGAAAAACAAUACACAAUUCAUUUGCACAAGCGUACGCUUGUUCAUAUGUAGGUACGGUUGUGGAUAUUUUUGGACUA
(((((.(((((.......))))).....))))).............((((((((((.((.((((((....)))))).)).))).......)))))))............... ( -23.81)
>DroEre_CAF1 21354 108 - 1
GCUGUGUUUGUAAUUUACACAAAACAAAACGGCAAGAAAAACAAUACACAAUUCAUUUGCACAAACGUACGUUUGUA----UGUACGUACGAUUGUGGAUAUUUUUGGACUA
(((((.(((((.......))))).....)))))...............(((......(.(((((.(((((((.....----...))))))).))))).).....)))..... ( -24.90)
>DroYak_CAF1 41397 112 - 1
GCUGUGUUUGUAAUUUACACAAAACAAAACGGCAAGAAAAACAAUACACAAUUCAUUUGCACAAACGUACGUUUGUAUUUAUGUAGGUACGAUUGUGGAUAUUUUUGGACUA
(((((.(((((.......))))).....))))).............(((((((.((((((((((((....))))))......))))))..)))))))............... ( -21.70)
>consensus
GCUGUGUUUGUAAUUUACACAAAACAAAACGGCAAGAAAAACAAUACACAAUUCAUUUGCACAAACGUACGCUUGUUCAUAUGUAGGUACGAUUGUGGAUAUUUUUGGACUA
(((((.(((((.......))))).....)))))..(((((......(((((((.((((((((((((....))))))......))))))..)))))))....)))))...... (-21.20 = -21.16 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:10 2006