| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 1,632,597 – 1,632,689 |
| Length | 92 |
| Max. P | 0.669873 |
| Location | 1,632,597 – 1,632,689 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 93.13 |
| Mean single sequence MFE | -25.65 |
| Consensus MFE | -23.97 |
| Energy contribution | -24.05 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.14 |
| Structure conservation index | 0.93 |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.669873 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1632597 92 - 23771897 UUUUAGUCCGCGGCGGCGUUCCCUUCACCUAUUCCAUUUUCACUCGACGCCUUUCCGCUUUCAGU-------UCGGAAAGAGACUGACUCGGAUUCGGA ((..(((((((((.((((((.........................))))))...))))..(((((-------((.....)).)))))...)))))..)) ( -23.41) >DroSec_CAF1 3545 99 - 1 UCUUAGUCCGCGGCGGCGUUCCCUUCACCUAUUCCAUUUUCACUCGACGCCUUUCCGCUUUCAGUUUCGCGUUCGCAAAGAGACUGACUCGGAUUCGAA ....(((((((((.((((((.........................))))))...))))..((((((((((....))...))))))))...))))).... ( -27.91) >DroSim_CAF1 3562 99 - 1 UCUUAGUCCGCGGCGGCGUUCCCUUCACCUAUUCCAUUUUCACUCGACGCCUUUCCGCUUUCAGUUUCGCGUUCGGAAAGAGACUGACUCGGAUUCGAA ....(((((((((.((((((.........................))))))...))))..((((((((...........))))))))...))))).... ( -26.91) >DroEre_CAF1 3502 99 - 1 UCUUAGUCCGCGGCGGCGUUCCCUUCACCUAUUCCAUUUUCACUCGGCGCCUUUCCGCUUUCAGUUUCGCGUUCGGAAAGAGACUGACUCGGAUUCGGA (((.(((((((((.((((((.........................))))))...))))..((((((((...........))))))))...))))).))) ( -28.91) >DroYak_CAF1 3462 99 - 1 UCUUAUUUCGCGGCAGCGUUCCCUUCACCUAUUCCAUUUUCACUCGGCGCUAUUCCGCUUUCAGUUUCGCGUUCGGAAAGAGACUGACUCGGAUUCGGA (((...(((((((.((((((.........................))))))...))))..((((((((...........))))))))...)))...))) ( -21.11) >consensus UCUUAGUCCGCGGCGGCGUUCCCUUCACCUAUUCCAUUUUCACUCGACGCCUUUCCGCUUUCAGUUUCGCGUUCGGAAAGAGACUGACUCGGAUUCGGA ....(((((((((.((((((.........................))))))...))))..((((((((...........))))))))...))))).... (-23.97 = -24.05 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:29 2006