Locus 5667

Sequence ID 3L_DroMel_CAF1
Location 15,556,315 – 15,556,411
Length 96
Max. P 0.761607
window8959

overview

Window 9

Location 15,556,315 – 15,556,411
Length 96
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 97.13
Mean single sequence MFE -23.62
Consensus MFE -23.04
Energy contribution -23.04
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.20
Structure conservation index 0.98
SVM decision value 0.50
SVM RNA-class probability 0.761607
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15556315 96 + 23771897
GUAACUAGCUUGCGGUAAACUUGCUGAACCGGAUCUUUAGAUGUAC----ACAUAUAGAUAUAGAUGUAGAUUCGGUUGUUGCAGCCCCAAGAAUCUUCA
........((((.(((.....(((..((((((((((.((..(((((----.......).))))..)).))))))))))...)))))).))))........ ( -23.80)
>DroSec_CAF1 18979 96 + 1
GUAACUAGCUUGCGGUAAACUUGCUGAACCGGAUCUUUAGAUGUAC----ACAUAUAGAUAUAGAUGUAGAUUCGGUUGUUGCAGCCCCAAGAAUCUUCA
........((((.(((.....(((..((((((((((.((..(((((----.......).))))..)).))))))))))...)))))).))))........ ( -23.80)
>DroSim_CAF1 19466 96 + 1
GUAACUAGCUUGCGGUAAACUUGCUGAACCGGAUCUUUAGAUGUAC----ACAUAUAGAUAUAGAUGUAGAUUCGGUUGUUGCAGCCCCAAGAAUCUUCA
........((((.(((.....(((..((((((((((.((..(((((----.......).))))..)).))))))))))...)))))).))))........ ( -23.80)
>DroEre_CAF1 19105 95 + 1
GUAACUAGCUUGCGGUAAACUUGCUGAACCGGAUCU-UAGAUGUAC----AUAUAUAGAUAUAGAUGUAGAUUCGGUUGUUGCAGCCCCAAGAAUCUUCA
........((((.(((.....(((..((((((((((-((..(((((----.......).))))..)).))))))))))...)))))).))))........ ( -23.00)
>DroYak_CAF1 39249 99 + 1
GUAACUAGCUUGCGGUAAACUUGCUGAACCGGAUCU-UAGAUGUACAUACAUAUAUAGAUAUAGAUGUAGAUUCGGUUGUUGCAGCCCCAAGAAUCUUCA
........((((.(((.....(((..((((((((((-.......((((..((((....))))..))))))))))))))...)))))).))))........ ( -23.71)
>consensus
GUAACUAGCUUGCGGUAAACUUGCUGAACCGGAUCUUUAGAUGUAC____ACAUAUAGAUAUAGAUGUAGAUUCGGUUGUUGCAGCCCCAAGAAUCUUCA
........((((.(((.....(((..((((((((((.((..((((..............))))..)).))))))))))...)))))).))))........ (-23.04 = -23.04 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:04 2006