Locus 5666

Sequence ID 3L_DroMel_CAF1
Location 15,553,193 – 15,553,298
Length 105
Max. P 0.586060
window8958

overview

Window 8

Location 15,553,193 – 15,553,298
Length 105
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 93.52
Mean single sequence MFE -21.70
Consensus MFE -19.08
Energy contribution -18.96
Covariance contribution -0.12
Combinations/Pair 1.11
Mean z-score -1.20
Structure conservation index 0.88
SVM decision value 0.11
SVM RNA-class probability 0.586060
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15553193 105 + 23771897
UUGAUUUUGUUGUUGUUACUUUCACAGCAGACAACACAAAAUUAAAUACCGAUUUCCAAGUAAAAGUUGAGUGGAAAAUUGAUUUCCAUAUAGCAAAGCUGACAG
((((((((((.((((((............))))))))))))))))....................((((.(((((((.....))))))).))))........... ( -22.40)
>DroSec_CAF1 15978 105 + 1
UUGAUUUUGUUGUUGUUACUUUCACAGCAGACAACACGAAAUUAAAUACCGAUUGCCAAGUAAAAGUUGAGUGGAAAAUUGAUUUCCAUAUAGCAAGGCUGACAG
((((((((((.((((((............))))))))))))))))........((...(((....((((.(((((((.....))))))).))))...)))..)). ( -23.20)
>DroSim_CAF1 16450 105 + 1
UUGAUUUUGUUGUUGUUACUUUCACAGCAGACAACACGAAAUUAAAUACCGAUUGCCAAGUAAAAGUUGAGUGGAAAAUUGAUUUCCAUAUAGCAAGGCUGACAG
((((((((((.((((((............))))))))))))))))........((...(((....((((.(((((((.....))))))).))))...)))..)). ( -23.20)
>DroEre_CAF1 16255 105 + 1
UUGAUUUUGUUGUUGUUACUUUCACAGCAGACAACACAGAUUUAAUUACCGAUUGCCAAGCAAAACUUGAGUGGAAAAUUGAUUUCUAUAUAGCAAAGCCGACAG
((((.(((((.((((((............))))))))))).)))).......((((((((.....)))).(((((((.....)))))))...))))......... ( -18.40)
>DroYak_CAF1 36178 105 + 1
UUGAUUUUGUUGUUGUUACUUUCACAGCAGACAACACAGAAUUAAUUACCGAUUGCUAAACAAAACUUGAGUGGAAAAUUGAUUUCUAUAUAGCAAAUCCGACAG
((((((((((.((((((............))))))))))))))))...(.((((((((..((.....)).(((((((.....))))))).)))).)))).).... ( -21.30)
>consensus
UUGAUUUUGUUGUUGUUACUUUCACAGCAGACAACACAAAAUUAAAUACCGAUUGCCAAGUAAAAGUUGAGUGGAAAAUUGAUUUCCAUAUAGCAAAGCUGACAG
((((((((((.((((((............))))))))))))))))....................((((.(((((((.....))))))).))))........... (-19.08 = -18.96 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:03 2006