Locus 5665

Sequence ID 3L_DroMel_CAF1
Location 15,552,557 – 15,552,677
Length 120
Max. P 0.876945
window8957

overview

Window 7

Location 15,552,557 – 15,552,677
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 92.17
Mean single sequence MFE -45.17
Consensus MFE -41.55
Energy contribution -41.47
Covariance contribution -0.08
Combinations/Pair 1.22
Mean z-score -1.38
Structure conservation index 0.92
SVM decision value 0.90
SVM RNA-class probability 0.876945
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15552557 120 - 23771897
AAGUCGCUGCAGGAAGAGCCGGUGGAGGGAUUCCGCGUCAAGCUGAUCAACGACGACAAUCUGUUCGAAUGGGAGGUGGCAAUCUUCGGGCCACCGGACACCCUCUACCAGGGCGGCUAC
.(((((((...((.....))(((((((((..((((((((............)))).).................((((((...(....))))))))))..)))))))))..))))))).. ( -49.40)
>DroSec_CAF1 15344 120 - 1
AAGUCGCUGCAGGAAGAGCCGGUGGAGGGAUUCCGCGUCAAGCUGAUCAACGACGACAAUUUGUUCGAAUGGGAGGUGGCAAUCUUCGGGCCACCGGACACCCUCUACCAGGGCGGCUAC
.(((((((...((.....))(((((((((.((((((.....)).......((((((....))).)))...))))((((((...(....))))))).....)))))))))..))))))).. ( -49.70)
>DroSim_CAF1 15816 120 - 1
AAGUCGCUGCAGGAAGAGCCGGUGGAGGGAUUCCGCGUCAAGCUGAUCAACGACGACAAUUUGUUCGAAUGGGAGGUGGCAAUCUUCGGCCCGCCGGACACCCUCUACCAGGGCGGCUAC
.(((((((...((.....))(((((((((..((((.((...(((......((((((....))).)))....((((((....)))))))))..))))))..)))))))))..))))))).. ( -46.60)
>DroEre_CAF1 15651 120 - 1
AAGUCACUGCAGGAAGAGCCGGUCGAGGGAUUCCGCGUCAAGCUGAUCAACGACGACAAUUUGUUCGAAUGGGAGGUGGCCAUCUUCGGGCCACCGGACACCCUCUACCAAGGCGGCUAC
.((((.((......)).((((((.(((((.((((((.....)).......((((((....))).)))...))))(((((((.......))))))).....))))).)))..))))))).. ( -44.40)
>DroYak_CAF1 35539 120 - 1
AAGUCACUGCAGGAAGAGCCGGUGGAGGGAUUCCGCGUCAAACUGAUCAACGACGACAAUUUGUUCGAAUGGGAGGUGGCCAUCUUCGGGCCACCGGACACCCUUUACCAAGGCGGCUAC
.((((.((......)).((((((((((((.((((.((.((((.((.((......)))).))))..))...))))(((((((.......))))))).....)))))))))..))))))).. ( -46.00)
>DroAna_CAF1 17485 120 - 1
AAGUCACUGCAGGAGGAACCGGUGGAGGGAUUCCGUGUCAAGCUGAUCAAUGACGAUAAUCUAUUUGAGUGGGAGGUGGCAAUUUUUGGGCCGCCAGAUACUCUCUAUCAGGGUGGAUAC
...(((((...((.....))(((((((((.((((...(((((..(((...........)))..)))))..))))((((((.........)))))).....)))))))))..))))).... ( -34.90)
>consensus
AAGUCACUGCAGGAAGAGCCGGUGGAGGGAUUCCGCGUCAAGCUGAUCAACGACGACAAUUUGUUCGAAUGGGAGGUGGCAAUCUUCGGGCCACCGGACACCCUCUACCAGGGCGGCUAC
.(((((((...((.....))(((((((((..(((.((((............))))...................((((((...(....))))))))))..)))))))))..))))))).. (-41.55 = -41.47 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:02 2006