Locus 5664

Sequence ID 3L_DroMel_CAF1
Location 15,549,864 – 15,549,963
Length 99
Max. P 0.606194
window8956

overview

Window 6

Location 15,549,864 – 15,549,963
Length 99
Sequences 4
Columns 113
Reading direction forward
Mean pairwise identity 69.53
Mean single sequence MFE -18.88
Consensus MFE -10.24
Energy contribution -11.05
Covariance contribution 0.81
Combinations/Pair 1.08
Mean z-score -1.55
Structure conservation index 0.54
SVM decision value 0.15
SVM RNA-class probability 0.606194
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15549864 99 + 23771897
----------UUAUUUAAUAAUAUUU----CCAAUAAAUCAAAACCAGGUGCCACUGCAGGAUGUCGUCAUCAAUGGACAUCCCAACUUCAUACCCUAUGCCUUGUUGGCCCU
----------................----................(((.((((..((((((((((..........)))))))......((((...))))...)))))))))) ( -18.60)
>DroSec_CAF1 12554 92 + 1
UCAAAUACCUUUAUUUAAUAA---------------------AACCAGGUGCCACUGCAGGAUGUCGUCAUCAAUGGACAUCCCAACUUCAUACCCUAUGCGUUGUUGGCCCU
.....................---------------------....(((.((((.....(((((((..........)))))))((((..((((...)))).)))).))))))) ( -20.90)
>DroSim_CAF1 13005 109 + 1
UCAAAUACCUUUAUUUAAUAAUAUUU----CCAAUAAAUCCAAACCAGGUGCCACUGCAGGAUGUCGUCAUCAAUGGACAUCCCAACUUCAUACCCUAUGCCUUGUUGGCCCU
..........................----................(((.((((..((((((((((..........)))))))......((((...))))...)))))))))) ( -18.60)
>DroAna_CAF1 15116 89 + 1
----------------------AUUUUGUGCCUGUUUAUC--CGUCAGAUUCCUCUGCAAGACGUUGUCAUCAACGGACACCCAAAUUUCAUACCAUACGCCUUGUUGGCGCU
----------------------.....(((((........--...((((....))))((((.(((((....))))((....))................).))))..))))). ( -17.40)
>consensus
__________UUAUUUAAUAA_AUUU____CCAAUAAAUC__AACCAGGUGCCACUGCAGGAUGUCGUCAUCAAUGGACAUCCCAACUUCAUACCCUAUGCCUUGUUGGCCCU
.............................................(((......)))..(((((((..........)))))))................(((.....)))... (-10.24 = -11.05 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:01 2006