Locus 5661

Sequence ID 3L_DroMel_CAF1
Location 15,539,211 – 15,539,331
Length 120
Max. P 0.997029
window8952

overview

Window 2

Location 15,539,211 – 15,539,331
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 97.00
Mean single sequence MFE -35.30
Consensus MFE -33.90
Energy contribution -33.86
Covariance contribution -0.04
Combinations/Pair 1.03
Mean z-score -1.89
Structure conservation index 0.96
SVM decision value 2.79
SVM RNA-class probability 0.997029
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15539211 120 + 23771897
UCAUGCAAAGCAAGCUGGCCAAGAAGGGUGUGAAUCGCCAAAAGAAGCAGACAAAGCGAGAGCACGACAAGAAGCGCAAGACGUCUCUGUUUCGCCGUAUAAGCAGCAAGCGUGCAAAUG
...((((..((..((((((.......((((.....))))....((((((((....((....)).......((..(....)...)))))))))))))((....)))))..)).)))).... ( -35.20)
>DroSec_CAF1 1945 120 + 1
UCAUGCAAAGCAAGCUGGCCAAGAAAGGUGUGAAUCGCCAAAAGAAGCAGACAAAGCGAGAGCACGACAAGAAGCGCAAGACGUCGCUGUUUCGCCGUAUAAGCAGCAAGCGUGCAAAUG
...((((..((..((((((.......((((.....))))....(((((((.....((....)).((((......(....)..))))))))))))))((....)))))..)).)))).... ( -35.90)
>DroSim_CAF1 1944 120 + 1
UCAUGCAAAGCAAGCUGGCCAAGAAAGGUGUGAAUCGCCAAAAGAAGCAGACAAAGCGAGAGCACGACAAGAAGCGCAAGACGUCGCUGUUUCGCCGUAUAAGCAGCAAGCGUGCAAAUG
...((((..((..((((((.......((((.....))))....(((((((.....((....)).((((......(....)..))))))))))))))((....)))))..)).)))).... ( -35.90)
>DroEre_CAF1 1943 120 + 1
UCAUGCAAAGCAAGCUGGCCAAGAAGGGUGUGAAUCGCCAGAAGAAGCAGACAAAGCGAGAGCACGACAAGAAGCGCAAGACCUCGCUAUUUCGCCGCAUCAGCAGCAAGCGUGCAAAUG
...((((..((..((((((.......((((.....)))).((((.(((.......((....)).......((.((....).).))))).)))))))((....)))))..)).)))).... ( -33.50)
>DroYak_CAF1 26731 120 + 1
UCAUGCAAAGCAAGCUGGCCAAGAAGGGUGUGAAUCGCCAGAAGAAGCAGACAAAGCGAGAGCACGACAAGAAGCGCAAGACCUCGCUGUUUCGCCGCAUAAGCAGCAAGCGUGCAAAUG
...((((..((..((((((.......((((.....))))....(((((((.(...((....)).......((.((....).).)))))))))))))((....)))))..)).)))).... ( -36.00)
>consensus
UCAUGCAAAGCAAGCUGGCCAAGAAGGGUGUGAAUCGCCAAAAGAAGCAGACAAAGCGAGAGCACGACAAGAAGCGCAAGACGUCGCUGUUUCGCCGUAUAAGCAGCAAGCGUGCAAAUG
...((((..((..((((((.......((((.....))))....(((((((.....((....)).......((..(....)...)).))))))))))((....)))))..)).)))).... (-33.90 = -33.86 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:57 2006