Locus 5659

Sequence ID 3L_DroMel_CAF1
Location 15,534,324 – 15,534,444
Length 120
Max. P 0.592630
window8950

overview

Window 0

Location 15,534,324 – 15,534,444
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 85.71
Mean single sequence MFE -23.27
Consensus MFE -16.19
Energy contribution -16.59
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.76
Structure conservation index 0.70
SVM decision value 0.12
SVM RNA-class probability 0.592630
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15534324 120 - 23771897
AGGUGUCAAUUUUUGAGUGCUAAUUAAGACAGAACUCACAUCUUACUAAAAGGAUAAAAAUAGCUUGUAAAUAUGCUACAAAUAUAAAUAACAAAGCUAAUAUUAUCGUUAUUGCGGAAA
((((((........((((.((.........)).))))))))))......((.(((((.(.((((((((..((((.......)))).....)).)))))).).))))).)).......... ( -14.20)
>DroSec_CAF1 4355 120 - 1
AGGUGUCAAGCUUUGGGUGCUAAUUAAGUCAGAACUCACAUCUUACCAAAACGAUAAAAAUAGCUUGUAAAUAUGCUACAAAUAUAAAUAUCAAAGCUAAUUUUAUCGUUAUCGCGGAAA
((((((..((.(((((.(........).))))).)).))))))......((((((((((.((((((....((((.............))))..)))))).)))))))))).......... ( -24.32)
>DroSim_CAF1 5539 115 - 1
AGGUGUCAAGAUUUGGGUGCUAAUUAAGUCAGAAUUGACAUCUUACCAAAACGAUAAAAAUAGCUUGUAAAUAUGCUACAAAUAUAAAUAUCAAAGCUAAUUUUAUCGUUAUCGU-----
(((((((((..(((((.(........).))))).)))))))))......((((((((((.((((((....((((.............))))..)))))).)))))))))).....----- ( -29.92)
>DroEre_CAF1 7646 117 - 1
AGGUGUCAAUCUUUGGGUGCUAAUUAAGUCAGAAUUCACAUCUUACUAAAACGAUAAAAAUAGCUUGUAAAUAUGCGUUUUUUUUA---AUCAAAGCUAAUAUUAUCGUUAUUGUGGAAA
.(((((.(((.(((((.(........).)))))))).)))))((((...((((((((.(.((((((.((((...........))))---....)))))).).))))))))...))))... ( -22.50)
>DroYak_CAF1 5986 112 - 1
AGGUGUCAAUCUUUGGGUGCUAAUUAAGUCAGAAUUCACAUCUUACUAAAACGAUAAAAAUAGCUUGUAAAUAAGCCUUUUU--------GCAAAGCUAAUAUUAUCGUUAUCGUGCAAA
((((((.(((.(((((.(........).)))))))).))))))(((...((((((((.(.(((((((((((........)))--------)).)))))).).))))))))...))).... ( -25.40)
>consensus
AGGUGUCAAUCUUUGGGUGCUAAUUAAGUCAGAAUUCACAUCUUACUAAAACGAUAAAAAUAGCUUGUAAAUAUGCUACAAAUAUAAAUAUCAAAGCUAAUAUUAUCGUUAUCGUGGAAA
((((((.....(((((.(........).)))))....))))))......((((((((.(.((((((...........................)))))).).)))))))).......... (-16.19 = -16.59 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:55 2006