Locus 5657

Sequence ID	3L_DroMel_CAF1
Location	15,533,624 – 15,533,717
Length	93
Max. P	0.747497

overview

Window 6

Location	15,533,624 – 15,533,717
Length	93
Sequences	5
Columns	93
Reading direction	reverse
Mean pairwise identity	96.34
Mean single sequence MFE	-29.36
Consensus MFE	-28.50
Energy contribution	-28.38
Covariance contribution	-0.12
Combinations/Pair	1.07
Mean z-score	-1.16
Structure conservation index	0.97
SVM decision value	0.47
SVM RNA-class probability	0.747497
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15533624 93 - 23771897
UGCUCAUCGUUUUUUUGCGGCGUUGAGGUGGAUAUCUUGCUGCCAAGGACAGCACUCACUGAGUGGUUGGACGAUGUCGAUGAUGAUGACGAU
...((((((((......(((((((..((..(........)..))..(..((((((((...)))).))))..))))))))..)))))))).... ( -29.70)
>DroSec_CAF1 3680 93 - 1
UGCUCAUCGUUCUUUUGCGGCGUUGAGGUGGAUAUCUUGCUGCCAAUUACAGCACUCACUGAGUGGUUGGACGAUGUCGAUGAUGAUGACGAU
...((((((((......((((((((.((..(........)..)).....((((((((...)))).))))..))))))))..)))))))).... ( -28.80)
>DroSim_CAF1 4863 93 - 1
UGCUCAUCGUUCUUUUGCGGCGUUGAGGUGGAUAUCUUGCUGCCAAUUACAGCGCUCACUGAGUGGUUGGACGAUGUCGAUGAUGAUGACGAU
...((((((((......((((((((.((..(........)..)).....((((((((...)))).))))..))))))))..)))))))).... ( -28.40)
>DroEre_CAF1 6956 93 - 1
UGCUCAUCGUUCUUUUGCGGCGUUGAGGUGGAUAUCUUGCUGCCUAGGACAGCACUCACUGAGUGGCUGGACGAUGUCGAUGAUAAUGACGAU
.....((((((.((...(((((((.(((..(........)..))).(..((((((((...)))).))))..)))))))).....)).)))))) ( -30.10)
>DroYak_CAF1 5275 93 - 1
UGCUCAUCGUUCUUUUGCGGCGUUGAGGUGGAUAUCUUGCUGCCUAGGACAGCACUCACUGAGUGGUUGGACGAUGUCGAUGAUGAUGACGAU
...((((((((......(((((((.(((..(........)..))).(..((((((((...)))).))))..))))))))..)))))))).... ( -29.80)
>consensus
UGCUCAUCGUUCUUUUGCGGCGUUGAGGUGGAUAUCUUGCUGCCAAGGACAGCACUCACUGAGUGGUUGGACGAUGUCGAUGAUGAUGACGAU
...((((((((......((((((((.((..(........)..)).....((((((((...)))).))))..))))))))..)))))))).... (-28.50 = -28.38 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:51 2006