Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 15,533,169 – 15,533,266 |
Length | 97 |
Max. P | 0.786541 |
Location | 15,533,169 – 15,533,266 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 80.26 |
Mean single sequence MFE | -18.04 |
Consensus MFE | -10.32 |
Energy contribution | -10.16 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.06 |
Mean z-score | -2.07 |
Structure conservation index | 0.57 |
SVM decision value | 0.57 |
SVM RNA-class probability | 0.786541 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15533169 97 + 23771897 UCGCUUCCCGUAUAUUCCCGAAUGUGUGUAGUAUGUACUACAUAUUAGUAUAUUUCGAUCCAAGUUUUGACCGAUUUAUACA------UAUA--UAAUUAUUAGC ..(((.....(((((........(((((((((....)))))))))..(((((..(((.((........)).)))..))))).------.)))--))......))) ( -20.00) >DroSec_CAF1 3245 99 + 1 UCGCUUCCCGUAUA----CGAAUAUGUGUAGUAUGUACUACAUAUUAGUAUAUUUCGAUCCAAUUUUUGACCGUUUUAUACACACGUGUAUA--UAAUUAUUAGC .........(((((----((...(((((((((....)))))))))..(((((...((.((........)).))...)))))...))))))).--........... ( -20.70) >DroSim_CAF1 4411 101 + 1 UCGCUUCCCGUAUA----CGAAUAUGUGUAGUAUGUACUACAUAUUAGUAUAUUUCGAUCCAAUUUUUGACCGAUUUAUACACACGUAUAUAUUUAAUUAUUAGC .........(((((----((...(((((((((....)))))))))..(((((..(((.((........)).)))..)))))...))))))).............. ( -23.80) >DroEre_CAF1 6536 74 + 1 UCGCUUCCCGUAUA----CGAAUAUGUGUAGUAUGUAAUACAUAUUAAUAUAUUUCGAUCCCAU-UUUAACCGAUU--------------------------UGC ..............----(((((((((.(((((((.....)))))))))))).)))).......-...........--------------------------... ( -10.60) >DroYak_CAF1 4832 90 + 1 ACGCUUCCCGUAAA----CGAAUAUGUGUAGUAUGUAAUACAUAUUAAUAUAUUUCGAUCCCAU-UUUAACCGAUUUGUACA--------UA--UAAUUAUUUGC .........(((((----..(.(((((((((((((.....))))))).((((..(((.......-......)))..))))))--------))--)).)..))))) ( -15.12) >consensus UCGCUUCCCGUAUA____CGAAUAUGUGUAGUAUGUACUACAUAUUAGUAUAUUUCGAUCCAAUUUUUGACCGAUUUAUACA______UAUA__UAAUUAUUAGC ..................((((.((((((((((((.....))))))).)))))))))................................................ (-10.32 = -10.16 + -0.16)
Location | 15,533,169 – 15,533,266 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 80.26 |
Mean single sequence MFE | -18.50 |
Consensus MFE | -10.32 |
Energy contribution | -11.76 |
Covariance contribution | 1.44 |
Combinations/Pair | 1.11 |
Mean z-score | -1.95 |
Structure conservation index | 0.56 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.656869 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15533169 97 - 23771897 GCUAAUAAUUA--UAUA------UGUAUAAAUCGGUCAAAACUUGGAUCGAAAUAUACUAAUAUGUAGUACAUACUACACACAUUCGGGAAUAUACGGGAAGCGA (((....((((--((((------((((((..((((((........))))))..)))))..)))))))))..............((((........)))).))).. ( -20.30) >DroSec_CAF1 3245 99 - 1 GCUAAUAAUUA--UAUACACGUGUGUAUAAAACGGUCAAAAAUUGGAUCGAAAUAUACUAAUAUGUAGUACAUACUACACAUAUUCG----UAUACGGGAAGCGA (((.....(((--(((((....))))))))..(((((........)))))...(((((.(((((((.(((.....)))))))))).)----)))).....))).. ( -24.00) >DroSim_CAF1 4411 101 - 1 GCUAAUAAUUAAAUAUAUACGUGUGUAUAAAUCGGUCAAAAAUUGGAUCGAAAUAUACUAAUAUGUAGUACAUACUACACAUAUUCG----UAUACGGGAAGCGA (((..........((((((....))))))..((((((........))))))..(((((.(((((((.(((.....)))))))))).)----)))).....))).. ( -22.00) >DroEre_CAF1 6536 74 - 1 GCA--------------------------AAUCGGUUAAA-AUGGGAUCGAAAUAUAUUAAUAUGUAUUACAUACUACACAUAUUCG----UAUACGGGAAGCGA ((.--------------------------..((((((...-....))))))..(((((.(((((((............))))))).)----))))......)).. ( -12.70) >DroYak_CAF1 4832 90 - 1 GCAAAUAAUUA--UA--------UGUACAAAUCGGUUAAA-AUGGGAUCGAAAUAUAUUAAUAUGUAUUACAUACUACACAUAUUCG----UUUACGGGAAGCGU ((.........--((--------(((.....((((((...-....))))))(((((((....))))))).........)))))((((----....))))..)).. ( -13.50) >consensus GCUAAUAAUUA__UAUA______UGUAUAAAUCGGUCAAAAAUUGGAUCGAAAUAUACUAAUAUGUAGUACAUACUACACAUAUUCG____UAUACGGGAAGCGA ((......................(((((..((((((........))))))..))))).....((((((....))))))......................)).. (-10.32 = -11.76 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:50 2006