Locus 5655

Sequence ID 3L_DroMel_CAF1
Location 15,531,500 – 15,531,595
Length 95
Max. P 0.919780
window8943

overview

Window 3

Location 15,531,500 – 15,531,595
Length 95
Sequences 5
Columns 101
Reading direction forward
Mean pairwise identity 62.05
Mean single sequence MFE -28.58
Consensus MFE -7.34
Energy contribution -8.66
Covariance contribution 1.32
Combinations/Pair 1.22
Mean z-score -3.38
Structure conservation index 0.26
SVM decision value 1.13
SVM RNA-class probability 0.919780
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15531500 95 + 23771897
GGUGUUCGUGUGCUGUGUGUGUGUG--GGGCUC--CUUCGCCGCCCCCACACAUACACAUACACAUACACAGCUAU--ACCAUUACCCAUACCAAUGCAAA
.((((..(((((.((((((((((((--((((..--.......).))))))))))))))))))))..))))......--....................... ( -38.00)
>DroSec_CAF1 1727 91 + 1
GGUGUUCGUGUGCUGUGUGUGUGUG--GGGCUC--CUUCGCCGCCCCCACA----CACAUACACAUACACAGCUAU--GCCAUUACCCAUACCAAAGCAAC
.((((..(((((.((((((((((.(--((((..--.......)))))))))----))))))))))))))).(((.(--(.............)).)))... ( -37.52)
>DroAna_CAF1 6242 76 + 1
-GUGUAAAUGUG-UGCGUGUGUGUG--GG------CGAAGGAGCCCCAACG----UACACAG----ACAGACUGGA--UCCCCUCCCCAUUCCUCU-----
-.(((...((((-(((((...((.(--((------(......)))))))))----)))))).----)))((.(((.--........))).))....----- ( -26.00)
>DroEre_CAF1 4803 89 + 1
GGUGUUCGUGUGCUGUAUGUGUGUGNNNNNNNNNNNNNNNNNNNNNNNNNA----CACACAC--------ACCUAUUACCUAUUACCCAUACCAAUGCAAA
.(((((.(((((..(((((((((((..........................----)))))))--------)............))).))))).)))))... ( -14.47)
>DroYak_CAF1 3211 87 + 1
GGUGUUCGUGUGCUAUAUGUGUGUAUGGGGCUC--CUUCGCCGCCCCCACA----CACACAC--------ACCCAUUACCCAUUACCCAUACCAAUGCAAA
((((...(((((.....(((((((..(((((..--.......))))).)))----)))))))--------))....))))..................... ( -26.90)
>consensus
GGUGUUCGUGUGCUGUGUGUGUGUG__GGGCUC__CUUCGCCGCCCCCACA____CACACAC____ACA_ACCUAU__CCCAUUACCCAUACCAAUGCAAA
.(((((.(((((......(((((((..((((...........)))).........)))))))...........((........))..))))).)))))... ( -7.34 =  -8.66 +   1.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:48 2006