Locus 5653

Sequence ID 3L_DroMel_CAF1
Location 15,516,958 – 15,517,049
Length 91
Max. P 0.909761
window8941

overview

Window 1

Location 15,516,958 – 15,517,049
Length 91
Sequences 6
Columns 112
Reading direction reverse
Mean pairwise identity 77.46
Mean single sequence MFE -23.63
Consensus MFE -10.85
Energy contribution -11.18
Covariance contribution 0.34
Combinations/Pair 1.24
Mean z-score -2.48
Structure conservation index 0.46
SVM decision value 1.07
SVM RNA-class probability 0.909761
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15516958 91 - 23771897
AUUUCUGGCUUCUGCAUUUGAGCUUCUCGUAUUUGUAAUUG------------UAAUUGUAAUUGUGGUUGUUGCUGCAGCUGGUCAUUUGCCUAAGC---------UAGAU
...((((((((..(((..(((.(..((.(((.(..((((..------------((((....))))..))))..).)))))..).)))..)))..))))---------)))). ( -27.00)
>DroSec_CAF1 19669 91 - 1
AUUUCUGGCUUCUGCAUUUGAGCUUCUCGUAUUUGUAAGUG------------UAAUUGUAAUUGUGGUUGUUGCUGCAGCUGGUCAUUUGCCUAAGC---------UAGAU
...((((((((..(((..((((((((........).)))).------------.............((((((....))))))..)))..)))..))))---------)))). ( -24.20)
>DroSim_CAF1 15463 91 - 1
AUUUCUGGCUUCUGCAUUUGAGCUUCUCGUAUUUGUAAGUG------------UAAUUGUAAUUGUGGUUGUUGCUGCAGCUGGUCAUUUGCCUAAGC---------UAGAU
...((((((((..(((..((((((((........).)))).------------.............((((((....))))))..)))..)))..))))---------)))). ( -24.20)
>DroEre_CAF1 28131 79 - 1
AU---UGGCUUCUGCAUUUGAGCUUCUCGUUA---------------------UAAUUGUAAUUGUUGUUGUUGCUGCAGCUGGUCAUUUGCCUAAGC---------UAGAU
.(---((((((..(((..(((.(.....((((---------------------(....)))))....(((((....))))).).)))..)))..))))---------))).. ( -19.80)
>DroYak_CAF1 28287 100 - 1
AU---UGGCUUCUGCAUUUGAGCUUCUCGUUAUUGUAAUUGUAAUUUUAAUUUUAAUUGUAAUUGUGGUUGUUGCUGCAGCUGGUCAUUUGCCUAAGC---------UAGAU
.(---((((((..(((..(((.(..((.((..(..((((..(((((.((((....)))).)))))..))))..)..))))..).)))..)))..))))---------))).. ( -24.60)
>DroAna_CAF1 27720 93 - 1
UUGUUUUGUUUUAAUUUUUGAGCUUCUUGUUU---GAAUUG------------UUGUUGCUAUUGUAGUAG----UGCAGCUGGUCGAUCGCCUAAGCUCUAGAGUCUAGAU
.......((((..(((((.((((((..((.((---((...(------------((((.(((((....))))----))))))...)))).))...)))))).)))))..)))) ( -22.00)
>consensus
AUUUCUGGCUUCUGCAUUUGAGCUUCUCGUAUUUGUAAUUG____________UAAUUGUAAUUGUGGUUGUUGCUGCAGCUGGUCAUUUGCCUAAGC_________UAGAU
.......((((..(((..(((.(..............................((((....)))).((((((....))))))).)))..)))..)))).............. (-10.85 = -11.18 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:46 2006