Locus 5643

Sequence ID 3L_DroMel_CAF1
Location 15,493,245 – 15,493,365
Length 120
Max. P 0.871363
window8921

overview

Window 1

Location 15,493,245 – 15,493,365
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 94.44
Mean single sequence MFE -30.41
Consensus MFE -29.45
Energy contribution -29.67
Covariance contribution 0.23
Combinations/Pair 1.07
Mean z-score -1.90
Structure conservation index 0.97
SVM decision value 0.87
SVM RNA-class probability 0.871363
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15493245 120 - 23771897
UUAAACAUACCCGAGUGCAGUGGCCAGAAUGGAUUUAUUAACAAUACGCGAUCCAAUUGCAAUUACUCCCUCAUCAAUUGCUCUGGCCAGAACUCGAUGUUCUGCACGGACAACACGACC
..............(((((.((((((((.((((((..............))))))...((((((...........))))))))))))))((((.....)))))))))............. ( -33.14)
>DroSec_CAF1 34461 120 - 1
CUGAACAUACCCGAGUGCAGUGGCCAGAAUGGAUUUAUCAACAAUACGCGACCCAAUUGCAAUUACUCCCUCAUCAAUUGCUCUGGCCAGAACUCGAUGUUCUGCACGGACAACACGACC
..((((((...(((((....((((((((.(((....................)))...((((((...........))))))))))))))..)))))))))))....((.......))... ( -30.55)
>DroYak_CAF1 116861 120 - 1
UUAAACAUACCCGAGUGCAGUGGUCAGAAUGGAUUUAUCAACAAUACGCGAUCCAACUGCAGUUACUCCUUCAUCAAUUGCUCCGGCCAGAACUCGAUGUUCUGCACGGACAACACAACC
............((.((((((........((((((..............)))))))))))).)).............(((.((((..((((((.....))))))..)))))))....... ( -27.54)
>consensus
UUAAACAUACCCGAGUGCAGUGGCCAGAAUGGAUUUAUCAACAAUACGCGAUCCAAUUGCAAUUACUCCCUCAUCAAUUGCUCUGGCCAGAACUCGAUGUUCUGCACGGACAACACGACC
..............(((((.((((((((.((((((..............))))))...((((((...........))))))))))))))((((.....)))))))))............. (-29.45 = -29.67 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:28 2006