Locus 5641

Sequence ID 3L_DroMel_CAF1
Location 15,491,916 – 15,492,036
Length 120
Max. P 0.802671
window8915

overview

Window 5

Location 15,491,916 – 15,492,036
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 92.64
Mean single sequence MFE -33.72
Consensus MFE -27.26
Energy contribution -28.82
Covariance contribution 1.56
Combinations/Pair 1.03
Mean z-score -2.01
Structure conservation index 0.81
SVM decision value 0.62
SVM RNA-class probability 0.802671
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15491916 120 - 23771897
CUGGUGUCCCUCCUAUUUCUGGCCACCAGUCAUGCGGAUGUUUUCGAUGAGUGUAACGAUGGUAACAACCUAUCCUUUGUUACUUCGCCAAAGAGUUGCGCACAUUAUAUCUUCUGCAAC
((((((.((...........)).))))))...((((((.......((((.(((((((...((((((((........))))))))((......))))))))).))))......)))))).. ( -35.22)
>DroSec_CAF1 33133 120 - 1
CUGGUGUCCCUACUGUUUCUGGCCACCAGUCAUGCGGAUAUUUUCGAUGAGUGUAACGAUGGUAACAACCUAUCCUUUAUUACUUCGCCAAAGAGUUGCGCACAUUAUAUCUUCUGCAAC
((((((.((...........)).))))))...((((((.......((((.(((((((((((((....))).)))..........((......))))))))).))))......)))))).. ( -32.42)
>DroSim_CAF1 35159 120 - 1
CUGGUGUCCCUACUGUUUCUGGCCACCAGUCAUGCGGAUAUUUUCGAUGAGUGUAACGAUGGUAACAACCUAUCCUUUAUUACUUCGCCAAAGAGUUGCGCACAUUAUAUCUUCUGCAAC
((((((.((...........)).))))))...((((((.......((((.(((((((((((((....))).)))..........((......))))))))).))))......)))))).. ( -32.42)
>DroYak_CAF1 115533 120 - 1
GUGGUGUGCCUACUACUUCUAGGCCCCAGCCGUGCGGAUAUUUUCGAUGAGUGUAAUGAUGGGAACAACCUAUCCUUUGUUACGUCGCCAAAGAGUUGCGCACACUAUAUUUUCUGCAAC
((((((((((.(((.(((...(((..(.(((((.((((....))))))).))(((((((((((.....))))))....))))))..))).)))))).).)))))))))............ ( -34.80)
>consensus
CUGGUGUCCCUACUAUUUCUGGCCACCAGUCAUGCGGAUAUUUUCGAUGAGUGUAACGAUGGUAACAACCUAUCCUUUAUUACUUCGCCAAAGAGUUGCGCACAUUAUAUCUUCUGCAAC
((((((.((...........)).))))))...((((((.......((((.((((((((((((.......)))))(((((.........))))).))))))).))))......)))))).. (-27.26 = -28.82 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:22 2006