Locus 5639

Sequence ID 3L_DroMel_CAF1
Location 15,490,553 – 15,490,673
Length 120
Max. P 0.708870
window8910

overview

Window 0

Location 15,490,553 – 15,490,673
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 96.39
Mean single sequence MFE -25.52
Consensus MFE -25.33
Energy contribution -25.20
Covariance contribution -0.13
Combinations/Pair 1.07
Mean z-score -1.55
Structure conservation index 0.99
SVM decision value 0.37
SVM RNA-class probability 0.708870
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15490553 120 - 23771897
UUGGCAAAACAAAAUACAGGAGUCUUAUCAACUUCUUCCUACAAGCAAUUGAAAAUGUUAAUUUUCUGAUACUGAGCCACAUAUGCGGCUGUAUCUUGGCGCCGAAUGUAUCACAUAUAU
(((((............((((((.......))))))........((....((((((....)))))).(((((..((((.(....).)))))))))...)))))))............... ( -26.40)
>DroSec_CAF1 31755 120 - 1
UUGGCAAAACAAAAUACAGGAGUCUUAUCAACUUCUUCUUACAAGCAAUUGAAAAUGUUAAUUUUCUGAUACUGAGCCACAUAGUCGGCUGUAUCUUGGCGCCGAAUGUAUCACAUAUAU
(((((............((((((.......))))))........((....((((((....)))))).(((((..((((........)))))))))...)))))))............... ( -25.70)
>DroSim_CAF1 33781 120 - 1
UUGGCAAAACAAAAUACGGGAGUCUUAUCAACUUCUUCUUACAAGCAAUUGAAAAUGUUAAUUUUCUGAUACUGAGCCACAUAGUCGGCUGUAUCUUGGCGCCGAAUGUAUCACAUAUAU
(((((............((((((.......))))))........((....((((((....)))))).(((((..((((........)))))))))...)))))))............... ( -25.70)
>DroYak_CAF1 114133 120 - 1
UUGGCAAAACAAAAUACAGAAGCCUUAUCAACUUCUUCUUACAAGCAAUUGAAAAUGUUAAUUUUCUGAUACUGAGCCUCACACUCGGCUGUAUCUUGGCGCCGAAUGUAUCACAUAUAU
(((((............(((((.........)))))........((....((((((....)))))).(((((..((((........)))))))))...)))))))............... ( -24.30)
>consensus
UUGGCAAAACAAAAUACAGGAGUCUUAUCAACUUCUUCUUACAAGCAAUUGAAAAUGUUAAUUUUCUGAUACUGAGCCACAUAGUCGGCUGUAUCUUGGCGCCGAAUGUAUCACAUAUAU
(((((............((((((.......))))))........((....((((((....)))))).(((((..((((........)))))))))...)))))))............... (-25.33 = -25.20 +  -0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:17 2006