Locus 5636

Sequence ID 3L_DroMel_CAF1
Location 15,489,753 – 15,489,873
Length 120
Max. P 0.668354
window8902

overview

Window 2

Location 15,489,753 – 15,489,873
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 88.19
Mean single sequence MFE -42.33
Consensus MFE -33.49
Energy contribution -35.68
Covariance contribution 2.19
Combinations/Pair 1.08
Mean z-score -1.59
Structure conservation index 0.79
SVM decision value 0.29
SVM RNA-class probability 0.668354
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15489753 120 - 23771897
GUGCACCGUAGGUGGUCAGGAGGAUAUGCCAACGAAUGGAAAUUCCGGUUUCCCAUCCGGUGGCACCGCCAUUUCGAGUGAUCUCAUUCACUGCCCCGCCUACGGACAGCAUCUGUAUCC
((((.((((((((((.(((..((...(((((.((.((((((((....)))).)))).)).)))))...)).....(((((....))))).)))..))))))))))...))))........ ( -47.80)
>DroSec_CAF1 30966 111 - 1
GUGCACAGUAGGUGGUCAGGAGGAUAUGCCAACGAAUGGGAGUCCCGGUUACCCAUC---------CGCCAUUUCGAGUAAUCUCAUCCACUGCCCCGCCUACGGACAGCAUCUGUAUCC
((((...((((((((.(((..((((.......((.(((((...........))))).---------)).......(((....))))))).)))..)))))))).....))))........ ( -33.20)
>DroSim_CAF1 32983 120 - 1
GUGCACCGUAGGUGGUCAGGAGGAUAUGCCAACGAAUGGGAAUCCCGGUUACCCAUCCGGUGGAUCCGCCAUUUCGAGUGAUCUCAUCCACUGCCCCGCCUACGGACAGCAUCUGUAUCC
((((.((((((((((.(((..((((........(.((((((((....))).))))).)((((....)))).....(((....))))))).)))..))))))))))...))))........ ( -45.70)
>DroYak_CAF1 113337 120 - 1
GUGCACCCUUGGUGGUCAGGAGGAUAUACCAUCGAGUGGGAACCCCGGUUUCCCAGCGGGUGGAUCCUCCAUAUCGAGUGAUCUCAUCCACUGCCCCGCCUACGGACAGCAUUUGUAUCC
((((..((..(((((...(((((((.((((..((..(((((((....).)))))).)))))).)))))))......((((........))))...)))))...))...))))........ ( -42.60)
>consensus
GUGCACCGUAGGUGGUCAGGAGGAUAUGCCAACGAAUGGGAAUCCCGGUUACCCAUCCGGUGGAUCCGCCAUUUCGAGUGAUCUCAUCCACUGCCCCGCCUACGGACAGCAUCUGUAUCC
((((.((((((((((.(((..((((...(((.((.((((((((....))).))))).)).)))............(((....))))))).)))..))))))))))...))))........ (-33.49 = -35.68 +   2.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:09 2006