Locus 5633

Sequence ID 3L_DroMel_CAF1
Location 15,487,965 – 15,488,083
Length 118
Max. P 0.874288
window8898

overview

Window 8

Location 15,487,965 – 15,488,083
Length 118
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 96.50
Mean single sequence MFE -32.83
Consensus MFE -31.30
Energy contribution -30.93
Covariance contribution -0.37
Combinations/Pair 1.09
Mean z-score -1.90
Structure conservation index 0.95
SVM decision value 0.88
SVM RNA-class probability 0.874288
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15487965 118 + 23771897
ACCAGAAUAUGUCUACAA--GAAAAGGCGCUCGCACACAAAGCUCUUUUGAGAGUUGUGUGGGCGUUCGCGGCAGAUACUUUAAGCUAUCACCAUUACUAUUAUGGAACAAAAGAUUCGA
....((((.(((((.(..--((....(((((((((((....(((((....))))))))))))))))))...).))))).............((((.......))))........)))).. ( -30.70)
>DroSec_CAF1 29088 118 + 1
ACCAGAAUAGGUCUACAA--GAAAAGGCGCUCGCACACAAAGCUCUUUUGGGAGUUGUGUGGGCGUUCGCGACAGAUACUUUAAGCUAUCACCAUUACUAUUAUGGAACAAAAGAUUCGA
.(((.((((((((.....--((....(((((((((((....(((((....))))))))))))))))))..))).((((........)))).......))))).))).............. ( -32.40)
>DroSim_CAF1 31113 118 + 1
ACCAGAAUAGGUCUACAA--GAAAAGGCGCUCGCACACAAAGCUCUUUUGGGAGUUGUGUGGGCGUUCGCGACAGAUACUUUAAGCUAUCACCAUUACUAUUAUGGAACAAAAGAUUCGA
.(((.((((((((.....--((....(((((((((((....(((((....))))))))))))))))))..))).((((........)))).......))))).))).............. ( -32.40)
>DroYak_CAF1 111459 120 + 1
ACCAGAAUAGGUCUACAAUAGAAAAGGCGCCCGCACACAAAGCUCUUUUUGGAGUUGUGUGGGCGUUCGCGGCAGAUACUUUAAGCUAUCACCAUUACUAUUAUGGAACAAAAGAAUCGA
.(((.(((((...............((((((((((((....(((((....)))))))))))))))))...((..((((........)))).))....))))).))).............. ( -35.80)
>consensus
ACCAGAAUAGGUCUACAA__GAAAAGGCGCUCGCACACAAAGCUCUUUUGGGAGUUGUGUGGGCGUUCGCGACAGAUACUUUAAGCUAUCACCAUUACUAUUAUGGAACAAAAGAUUCGA
.(((.((((((((..(....)....((((((((((((....(((((....)))))))))))))))))...))).((((........)))).......))))).))).............. (-31.30 = -30.93 +  -0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:05 2006