| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,465,582 – 15,465,702 |
| Length | 120 |
| Max. P | 0.527731 |
| Location | 15,465,582 – 15,465,702 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 82.22 |
| Mean single sequence MFE | -41.40 |
| Consensus MFE | -28.36 |
| Energy contribution | -29.03 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.68 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.527731 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15465582 120 + 23771897 AGAUCAAGCGCAUCGCGCGCCAUCGCCAGGUGCCGCGUCACGUGCUCAAUGCACAGAAGAAGAUGCGCACGGUCAAGGAGAAGGAGCAGGUCAAGGAGGCCAAUGUGCGCAAGCACACCA .((((..((((((((((((.((((....)))).)))))...((((.....)))).......)))))))..))))........((....((((.....))))..(((((....))))))). ( -52.60) >DroWil_CAF1 220541 120 + 1 AAAUUAAACGUAUUGCCCGGCAUCGUCAAGUGCCGCGUCAUGUCCUUAAUGCUCAACGCAAAAUGCGUGUGGUCAAGGAGAAGGAUCAAAUCAAGGAGGCCAAUGUGCGUAAGCACUCCA ..............(((((((((......)))))).(((.(.(((((...(((..((((.....))))..))).))))).)..)))...........)))....((((....)))).... ( -32.20) >DroAna_CAF1 333814 120 + 1 AGAUCAAGCGCAUUGCCCGCCAUCGCCAGGUGCCGCGCCAUGUCAUGAAUGCCCAGAGAAAGAUGCGCCUGGUCAAGGAUAAGGAGCAGGUCAAGGAGGCUAAUGUGCGCAAGCACUCCA .(((((.(((((((((.((.((((....)))).)).))..(.((.((......)))).)..))))))).)))))........(((...((((.....))))...((((....))))))). ( -39.40) >consensus AGAUCAAGCGCAUUGCCCGCCAUCGCCAGGUGCCGCGUCAUGUCCUCAAUGCACAGAGAAAGAUGCGCAUGGUCAAGGAGAAGGAGCAGGUCAAGGAGGCCAAUGUGCGCAAGCACUCCA .(((((.(((((((((.((.((((....)))).)).))...((.......)).........))))))).)))))........((....((((.....))))...((((....)))).)). (-28.36 = -29.03 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:04 2006