Locus 5630

Sequence ID 3L_DroMel_CAF1
Location 15,458,540 – 15,458,650
Length 110
Max. P 0.809242
window8893

overview

Window 3

Location 15,458,540 – 15,458,650
Length 110
Sequences 4
Columns 119
Reading direction reverse
Mean pairwise identity 75.67
Mean single sequence MFE -25.17
Consensus MFE -17.51
Energy contribution -17.82
Covariance contribution 0.31
Combinations/Pair 1.06
Mean z-score -1.66
Structure conservation index 0.70
SVM decision value 0.64
SVM RNA-class probability 0.809242
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15458540 110 - 23771897
---------UUGUACGCUUAACACAUGUUCUCUGUUAUUUGACAAUUAACAAACUAAUUUCUAUUUCCAGGCAUGUCCAUCAUGGAGGGCUCUGCGGAUAUUUUCCUGGAACUCCGCGA
---------.....(((........((((...((((....))))...)))).............(((((((.((((((..((.((....)).)).))))))...)))))))....))). ( -23.30)
>DroSec_CAF1 189727 90 - 1
---------UUAUAC-------------GUUU-------UGACAAAUAAACAACUAAUUUGUAUUUCCAGGCAUGUCCAUCAUGGAGGGCUCUGAGGAUAUUUUCCUGGAACUCCGCGA
---------.....(-------------((..-------..((((((.........))))))..(((((((.((((((.(((.((....)).)))))))))...)))))))....))). ( -22.70)
>DroSim_CAF1 192278 97 - 1
---------UUAUGC-------------UCUUUGGUAUUUUACAAAUAACAAAUUAAUUUGUAUUUCCAGGCAUGUCCAUCAUGGAGGGCUCUGAGGACAUUUUCCUGGAACUCCGCGA
---------...(((-------------............(((((((.........))))))).(((((((.((((((.(((.((....)).)))))))))...)))))))....))). ( -26.10)
>DroYak_CAF1 191870 119 - 1
UUUAAAUGGGUGUAUUUUUAACAUAUAUUCCCUGUUAUUUGACAAAUAACUAACUAAUUUGAAUUUCCAGGCAUGUCCAUCAUGGAGGGCUCCGAGGAUAUUUUCCUGGAACUCCGCGA
((((((((((.((((.........)))).))).((((((.....))))))......))))))).(((((((.((((((.((..(((....)))))))))))...)))))))........ ( -28.60)
>consensus
_________UUAUAC_____________UCUCUGUUAUUUGACAAAUAACAAACUAAUUUGUAUUUCCAGGCAUGUCCAUCAUGGAGGGCUCUGAGGAUAUUUUCCUGGAACUCCGCGA
................................................................(((((((.((((((.(((.((....)).)))))))))...)))))))........ (-17.51 = -17.82 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:00 2006