Locus 563

Sequence ID	3L_DroMel_CAF1
Location	1,616,961 – 1,617,062
Length	101
Max. P	0.569203

overview

Window 0

Location	1,616,961 – 1,617,062
Length	101
Sequences	6
Columns	109
Reading direction	forward
Mean pairwise identity	81.35
Mean single sequence MFE	-38.60
Consensus MFE	-20.07
Energy contribution	-21.27
Covariance contribution	1.20
Combinations/Pair	1.24
Mean z-score	-2.31
Structure conservation index	0.52
SVM decision value	0.07
SVM RNA-class probability	0.569203
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1616961 101 + 23771897
GUUGCCGAU------GCCGGAGCCACCUGCUGCUGCAAGGCAGGAGGCUGCGGAGCAGCAUUAUCAUCCGACAUGUACGGUUCUACGAGAAAUUUUU--CGGUGAGUUC
(((((....------.(((.((((.((((((.......)))))).)))).))).)))))....(((((((.......))).....(((((....)))--)))))).... ( -37.10)
>DroPse_CAF1 1831 103 + 1
GAUGCUGGU------GCCGGUACCACCUGCUGCUGCAAAGCAGGAGGUGGCGGAGCAGCAGCAUCAUCCGACAUGUACGGUUCUACGAGAAAUUUUUGUUCGUGAAUUG
(((((((.(------(((.(..((((((.(((((....))))).))))))).).))).)))))))............((((((.(((((.........))))))))))) ( -45.90)
>DroSec_CAF1 1688 101 + 1
GUUGCCGAU------GCCGGAGCCACCUGCUGCUGCAAGGCAGGAGGCUGCGGAGCAGCAUUAUCAUCCGACAUGUACGGUUCUACGAGAAAUUUUU--CGGUGAGUUC
(((((....------.(((.((((.((((((.......)))))).)))).))).)))))....(((((((.......))).....(((((....)))--)))))).... ( -37.10)
>DroSim_CAF1 1446 101 + 1
GUUGCCGAU------GCCGGAGCCACCUGCUGCUGCAAGGCAGGAGGCUGCGGAGCAGCAUUAUCAUCCGACAUGUACGGUUCUACGAGAAAUUUUU--CGGUGAGUUC
(((((....------.(((.((((.((((((.......)))))).)))).))).)))))....(((((((.......))).....(((((....)))--)))))).... ( -37.10)
>DroMoj_CAF1 1630 96 + 1
GUUGCUGGU------GCGGAUGCAUGAACCUGCUGCAAAGCAGGAGAUGGCGAAACAGCAGCAUCAUCCGACAUGAAAGGUUCUACGAAAAAUUUGU--G---GAAU--
.....(.((------(((((((.(((..((((((....)))))).....((......))..))))))))).))).)...(((((((((.....))))--)---))))-- ( -33.30)
>DroAna_CAF1 1221 107 + 1
GAUGCCGGAGCCAGAGCCGGAGCCACCUGCUGUGGCACGGCAUUAGGCUGCGGAGCAGCAUUAUCAUCCGACAUAUAUGGUUCUACGAGAAAUUGUU--CGGUGAAUUG
(((((((..((((.(((.((.....)).))).)))).)))))))..(((((...)))))....(((.((((((....)).....((((....)))))--)))))).... ( -41.10)
>consensus
GUUGCCGAU______GCCGGAGCCACCUGCUGCUGCAAGGCAGGAGGCUGCGGAGCAGCAUUAUCAUCCGACAUGUACGGUUCUACGAGAAAUUUUU__CGGUGAAUUC
(((((...........(((.((((.((((((.......)))))).)))).))).)))))........(((.......)))............................. (-20.07 = -21.27 +   1.20)

alignment

secondary structure

dotplot

Window 1

Location	1,616,961 – 1,617,062
Length	101
Sequences	6
Columns	109
Reading direction	reverse
Mean pairwise identity	81.35
Mean single sequence MFE	-32.76
Consensus MFE	-18.61
Energy contribution	-19.61
Covariance contribution	1.00
Combinations/Pair	1.15
Mean z-score	-2.00
Structure conservation index	0.57
SVM decision value	0.05
SVM RNA-class probability	0.561158
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1616961 101 - 23771897
GAACUCACCG--AAAAAUUUCUCGUAGAACCGUACAUGUCGGAUGAUAAUGCUGCUCCGCAGCCUCCUGCCUUGCAGCAGCAGGUGGCUCCGGC------AUCGGCAAC
....((((((--(.........((......))......)))).)))...(((((..(((.((((.(((((.........))))).)))).))).------..))))).. ( -32.36)
>DroPse_CAF1 1831 103 - 1
CAAUUCACGAACAAAAAUUUCUCGUAGAACCGUACAUGUCGGAUGAUGCUGCUGCUCCGCCACCUCCUGCUUUGCAGCAGCAGGUGGUACCGGC------ACCAGCAUC
...(((((((...........)))).)))(((.......)))..(((((((.((((..(((((((.(((((....))))).)))))))...)))------).))))))) ( -40.30)
>DroSec_CAF1 1688 101 - 1
GAACUCACCG--AAAAAUUUCUCGUAGAACCGUACAUGUCGGAUGAUAAUGCUGCUCCGCAGCCUCCUGCCUUGCAGCAGCAGGUGGCUCCGGC------AUCGGCAAC
....((((((--(.........((......))......)))).)))...(((((..(((.((((.(((((.........))))).)))).))).------..))))).. ( -32.36)
>DroSim_CAF1 1446 101 - 1
GAACUCACCG--AAAAAUUUCUCGUAGAACCGUACAUGUCGGAUGAUAAUGCUGCUCCGCAGCCUCCUGCCUUGCAGCAGCAGGUGGCUCCGGC------AUCGGCAAC
....((((((--(.........((......))......)))).)))...(((((..(((.((((.(((((.........))))).)))).))).------..))))).. ( -32.36)
>DroMoj_CAF1 1630 96 - 1
--AUUC---C--ACAAAUUUUUCGUAGAACCUUUCAUGUCGGAUGAUGCUGCUGUUUCGCCAUCUCCUGCUUUGCAGCAGGUUCAUGCAUCCGC------ACCAGCAAC
--....---.--........................((.((((((((((((((((...((........))...)))))))...))).)))))))------)........ ( -22.80)
>DroAna_CAF1 1221 107 - 1
CAAUUCACCG--AACAAUUUCUCGUAGAACCAUAUAUGUCGGAUGAUAAUGCUGCUCCGCAGCCUAAUGCCGUGCCACAGCAGGUGGCUCCGGCUCUGGCUCCGGCAUC
...(((..((--(........)))..)))......((((((((......(((......)))(((....((((.(((((.....)))))..))))...))))))))))). ( -36.40)
>consensus
GAACUCACCG__AAAAAUUUCUCGUAGAACCGUACAUGUCGGAUGAUAAUGCUGCUCCGCAGCCUCCUGCCUUGCAGCAGCAGGUGGCUCCGGC______ACCGGCAAC
....................................((((((........((((....((.((((.((((......)))).)))).))..)))).......)))))).. (-18.61 = -19.61 +   1.00)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:25 2006