| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,454,431 – 15,454,535 |
| Length | 104 |
| Max. P | 0.905733 |
| Location | 15,454,431 – 15,454,535 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 88.77 |
| Mean single sequence MFE | -19.14 |
| Consensus MFE | -16.46 |
| Energy contribution | -16.66 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.86 |
| SVM decision value | 1.04 |
| SVM RNA-class probability | 0.905733 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15454431 104 + 23771897 GCUCUACAGCCCAAAAAACCAAAAA--GAAGAAGAAAAAAAUAAUAGCAUGGGAGAAGUAGAGGGAAAACUCAUAUUCCCAUUGGCAUCAAAUUGUCUGCACGACA (((((((..((((............--......................))))....)))))(((((........)))))...((((......)))).))...... ( -18.48) >DroSec_CAF1 185628 101 + 1 GCUCGACAGCCCAAAAAACCAAAAU--GAAGAA--A-AAAAUAAUAGCAUGGGAGAAGUGGAGGGAAAACUCAUAUUCCCAUUGGCAUCAAAUUGUCUGCACGACA ((..(((((((((............--......--.-............)))).((.((.(((((((........))))).)).)).))...))))).))...... ( -19.28) >DroSim_CAF1 188132 102 + 1 GCUCUACAGCCCAAAAAACCAAAAU--GAAGAA--AAAAAAUAAUAGCAUGGGAGAAGUGGAGGGAAAACUCAUAUUCCCAUUGGCAUCAAAUUGUCUGCACGACA (((((((..((((............--......--..............))))....)))))(((((........)))))...((((......)))).))...... ( -18.25) >DroEre_CAF1 182939 98 + 1 GCUCUACAGCCCAAAAAAACAAAAAA--AAA------GGAAAAAUAGCAUGGGAGAAGUAGAGGGAAAACUCAUAUUCCCAUUGGCAUCAAAUUGUCUGCACGACA (((((((..((((.............--...------............))))....)))))(((((........)))))...((((......)))).))...... ( -18.69) >DroYak_CAF1 187475 98 + 1 GCUGCACAGCCAAAA--AACAAAAAACCGAG------AAAAAAAUAGCUUGGGAGAAGUAGAGGGAAAACUCAUAUUCCCAUUGGCAUCAAAUUGUCUGCACGACA ........(((((..--.........(((((------..........)))))..........(((((........))))).))))).......((((.....)))) ( -21.00) >consensus GCUCUACAGCCCAAAAAACCAAAAA__GAAGAA__A_AAAAUAAUAGCAUGGGAGAAGUAGAGGGAAAACUCAUAUUCCCAUUGGCAUCAAAUUGUCUGCACGACA (((....)))....................................(((((((((.(...(((......))).).))))))).((((......)))).))...... (-16.46 = -16.66 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:59 2006