Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 15,446,018 – 15,446,110 |
Length | 92 |
Max. P | 0.873203 |
Location | 15,446,018 – 15,446,110 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 80.64 |
Mean single sequence MFE | -29.91 |
Consensus MFE | -17.48 |
Energy contribution | -18.03 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.06 |
Mean z-score | -2.15 |
Structure conservation index | 0.58 |
SVM decision value | 0.50 |
SVM RNA-class probability | 0.760301 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15446018 92 + 23771897 GCGGAGGAGGG-UGGGAAAUCGAGGACGGUAAGGGGAUUCCCGGCCUGGCAGUAGUUAAAAUUUACUGCCCAGUUGCCAAACGCAACAGUAGC (((..(((((.-((((((((((....)))).......)))))).)))((((((((.......))))))))......))...)))......... ( -30.81) >DroSec_CAF1 177358 89 + 1 GCGGAGGUGGG-UGGGAAUUCGAGGAUGGUAAGGGGAUUCCCGGCCUGGCAGUAGUUAAAAUUUACUGCCCAGUUGCCAAACGC---AGUAGC (((..(((((.-(((((((((.............))))))))).)).((((((((.......)))))))).....)))...)))---...... ( -34.42) >DroSim_CAF1 179604 92 + 1 GCGGAGGUGGG-UGGGAAAUCCAGGAUGGUAAGGGGAUUCCCGGCCUGGCAGUAGUUAAAAUUUACUGCCCAGUUGCCAAACGCAACAGUAGC (((..((..(.-((((....(((((.......(((....)))..)))))((((((.......)))))))))).)..))...)))......... ( -34.20) >DroEre_CAF1 174201 69 + 1 GCGGAGGA------------------------GGGGAUUGCCGGCCUGGCAGUAGUUAAAAUUUACUGCCCAGUUGCCAAACGCAACAGUAGC (((.....------------------------((......))(((((((((((((.......)))))).))))..)))...)))......... ( -22.40) >DroYak_CAF1 179545 93 + 1 GCGGAGAAGGGUUGGGAAAUCGAGGAUGGUAAGGGGAUUGCCGGCCUGGCAGUAGUUAAAAUUUACUGCCCAGUUGCCAAACGCAACAGUAGC ((......(((((((..((((..............)))).)))))))((((((((.......))))))))..(((((.....)))))....)) ( -28.24) >DroAna_CAF1 315610 84 + 1 UCA--GGGG---GGACGAAUCGGGAA----AAUAGGAUUCGUUGCCUGGCAGUAGUUAAAAUUUACUGCCCAGCUACCAAACGCAACAGUAGC ...--.(((---.((((((((.....----.....)))))))).)))((((((((.......))))))))..(((((...........))))) ( -29.40) >consensus GCGGAGGAGGG_UGGGAAAUCGAGGAUGGUAAGGGGAUUCCCGGCCUGGCAGUAGUUAAAAUUUACUGCCCAGUUGCCAAACGCAACAGUAGC (((..............................((.....))(((((((((((((.......)))))).))))..)))...)))......... (-17.48 = -18.03 + 0.56)
Location | 15,446,018 – 15,446,110 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 80.64 |
Mean single sequence MFE | -23.46 |
Consensus MFE | -18.97 |
Energy contribution | -20.19 |
Covariance contribution | 1.22 |
Combinations/Pair | 1.22 |
Mean z-score | -1.82 |
Structure conservation index | 0.81 |
SVM decision value | 0.88 |
SVM RNA-class probability | 0.873203 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15446018 92 - 23771897 GCUACUGUUGCGUUUGGCAACUGGGCAGUAAAUUUUAACUACUGCCAGGCCGGGAAUCCCCUUACCGUCCUCGAUUUCCCA-CCCUCCUCCGC (((.(.(((((.....))))).)(((((((.........))))))).))).(((((...................))))).-........... ( -24.21) >DroSec_CAF1 177358 89 - 1 GCUACU---GCGUUUGGCAACUGGGCAGUAAAUUUUAACUACUGCCAGGCCGGGAAUCCCCUUACCAUCCUCGAAUUCCCA-CCCACCUCCGC ......---(((...(((.....(((((((.........)))))))..)))((((((.................)))))).-........))) ( -23.63) >DroSim_CAF1 179604 92 - 1 GCUACUGUUGCGUUUGGCAACUGGGCAGUAAAUUUUAACUACUGCCAGGCCGGGAAUCCCCUUACCAUCCUGGAUUUCCCA-CCCACCUCCGC (((.(.(((((.....))))).)(((((((.........))))))).))).((((((((............))))))))..-........... ( -27.40) >DroEre_CAF1 174201 69 - 1 GCUACUGUUGCGUUUGGCAACUGGGCAGUAAAUUUUAACUACUGCCAGGCCGGCAAUCCCC------------------------UCCUCCGC (((.(.(((((.....))))).)(((((((.........))))))).....))).......------------------------........ ( -19.30) >DroYak_CAF1 179545 93 - 1 GCUACUGUUGCGUUUGGCAACUGGGCAGUAAAUUUUAACUACUGCCAGGCCGGCAAUCCCCUUACCAUCCUCGAUUUCCCAACCCUUCUCCGC (((.(.(((((.....))))).)(((((((.........))))))).))).((.((((..............)))).)).............. ( -20.14) >DroAna_CAF1 315610 84 - 1 GCUACUGUUGCGUUUGGUAGCUGGGCAGUAAAUUUUAACUACUGCCAGGCAACGAAUCCUAUU----UUCCCGAUUCGUCC---CCCC--UGA (((((((.......)))))))..(((((((.........))))))).((..(((((((.....----.....)))))))..---))..--... ( -26.10) >consensus GCUACUGUUGCGUUUGGCAACUGGGCAGUAAAUUUUAACUACUGCCAGGCCGGGAAUCCCCUUACCAUCCUCGAUUUCCCA_CCCUCCUCCGC (((.(.(((((.....))))).)(((((((.........))))))).))).(((((((..............))))))).............. (-18.97 = -20.19 + 1.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:56 2006