Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 15,440,694 – 15,440,788 |
Length | 94 |
Max. P | 0.897976 |
Location | 15,440,694 – 15,440,788 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 92.53 |
Mean single sequence MFE | -29.87 |
Consensus MFE | -25.16 |
Energy contribution | -25.68 |
Covariance contribution | 0.53 |
Combinations/Pair | 1.04 |
Mean z-score | -2.25 |
Structure conservation index | 0.84 |
SVM decision value | 1.00 |
SVM RNA-class probability | 0.897976 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15440694 94 - 23771897 ---CUUUUGGGCAAUCACGAACAACGACUUGAGCGCCAUUGAUUGACGUUUGAUUGAGAAUUACCUUAGCCAUUGUGUCAAUCAAGGUGUGCUCUGG ---.....((((.....((.....))......(((((.((((((((((..((..((((......))))..))...)))))))))))))))))))... ( -28.00) >DroSec_CAF1 171987 93 - 1 ---CUU-UGGGCAAUCACGAGCAACGACUUGAGCGCCAUUGAUUGACGUUUGAUUGAGAAUUACCUUAGCCAUUGUGUCAAUCAAGGUGUGCUCCGG ---...-(((((.....((((......)))).(((((.((((((((((..((..((((......))))..))...))))))))))))))))).))). ( -30.50) >DroSim_CAF1 173728 93 - 1 ---CUU-UGGGCAAUCACGAGCAACGACUUGAGCGCCAUUGAUUGACGUUUGAUUGAGAAUUACCUUAGCCAUUGUGUCAAUCAAGGUGUGCUCCGG ---...-(((((.....((((......)))).(((((.((((((((((..((..((((......))))..))...))))))))))))))))).))). ( -30.50) >DroEre_CAF1 168454 90 - 1 ---CUU-UGGGCAAUCACGA---ACGACUUGAGCGCCAUUGAUUGACGUUUGAUUGAGAAUUACCUUAGCCAUUGUGUCAAUCAAGGUGUGCUCCGG ---...-(((((..(((.(.---....).)))(((((.((((((((((..((..((((......))))..))...))))))))))))))))).))). ( -27.90) >DroYak_CAF1 174054 90 - 1 ---CUU-UGGGCAAUCACGA---ACGACUUGAGCGCCCUUGAUUGACGUUCGAUUGAGAAUUACCUUAGCCAUUGUGUCAAUCAAGGUGUGCUCGGG ---..(-((..(......).---.)))(((((((((((((((((((((..((((((((......))))...)))))))))))))))).))))))))) ( -34.40) >DroAna_CAF1 310277 92 - 1 GGUCUU-U-GGAAAUCACGA---ACGACUUAAGCGCCAUUGAUUGACGUUUGAUUGAGAAUUACCUUAGCCAUUGUGUCAAUCAAGGUGUGUGUGUG ((((((-(-(.......)))---).))))...(((((.((((((((((..((..((((......))))..))...)))))))))))))))....... ( -27.90) >consensus ___CUU_UGGGCAAUCACGA___ACGACUUGAGCGCCAUUGAUUGACGUUUGAUUGAGAAUUACCUUAGCCAUUGUGUCAAUCAAGGUGUGCUCCGG ........((((.....((.....))......(((((.((((((((((..((..((((......))))..))...)))))))))))))))))))... (-25.16 = -25.68 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:53 2006