Locus 5624

Sequence ID 3L_DroMel_CAF1
Location 15,430,336 – 15,430,426
Length 90
Max. P 0.560558
window8884

overview

Window 4

Location 15,430,336 – 15,430,426
Length 90
Sequences 5
Columns 96
Reading direction forward
Mean pairwise identity 89.94
Mean single sequence MFE -31.74
Consensus MFE -23.92
Energy contribution -24.32
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.57
Structure conservation index 0.75
SVM decision value 0.05
SVM RNA-class probability 0.560558
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15430336 90 + 23771897
AGAGCAACCCUUUUCAGCGCUCGCCACGGA------UCCGAAUCCGGCAUUUUGGCCACGGCUCCGGGUAAAGAGUCCCGGUAAAAGUCCAGGCAU
.((((.............))))(((..(((------(....))))(((......)))..(((((((((........)))))....))))..))).. ( -29.52)
>DroSec_CAF1 159320 77 + 1
AGAGCAACCCUUUUCAGCGCUCGCCACGGA------UCCGAAUCCGGCAUUUUGGCCACGGCUCCGG-------------GUAAAAGUCCAGGCAU
.((((.............))))(((..(((------(....))))((.(((((.(((.((....)))-------------)).))))))).))).. ( -24.92)
>DroSim_CAF1 163808 90 + 1
AGAGCAACCCUUUUCAGCGCUCGCCACGGA------UCCGAAUCCGGCAUUUUGGCCACGGCUCCGGGUAAAGAGUCCGGGUAAAAGUCCAGGCAU
.((((.............))))(((..(((------(....((((((..((((.(((.((....))))).))))..))))))....)))).))).. ( -30.72)
>DroEre_CAF1 160089 89 + 1
AGAGCAACCCUUUUCAGCGCUCGCCACGGA------UCCGAAUCCGGCAUU-UGGCCACGGCUCCGGGUAAAGAGUCCGGAUAAAAGUCCGGGCAU
.((((.............))))(((.((((------(....((((((.(((-(.(((.((....)))))...))))))))))....)))))))).. ( -36.02)
>DroYak_CAF1 165110 96 + 1
AGAGCAACCCUUUUCAGCGCUCGCCACGGAUCCGGAUCCGAAUCCGGCAUUUUGGCCACGGCUCCGGGUAAAGAGUCCGGGUAAAAGUCCGGGCAU
.((((.............))))(((.((((.((((((....))))(((......)))..)).))))))).....(((((((......))))))).. ( -37.52)
>consensus
AGAGCAACCCUUUUCAGCGCUCGCCACGGA______UCCGAAUCCGGCAUUUUGGCCACGGCUCCGGGUAAAGAGUCCGGGUAAAAGUCCAGGCAU
.((((.............))))(((.((((......)))).((((((......(((....)))))))))......................))).. (-23.92 = -24.32 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:52 2006