Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 15,427,351 – 15,427,441 |
Length | 90 |
Max. P | 0.876435 |
Location | 15,427,351 – 15,427,441 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 75.08 |
Mean single sequence MFE | -13.42 |
Consensus MFE | -0.90 |
Energy contribution | -1.66 |
Covariance contribution | 0.76 |
Combinations/Pair | 1.20 |
Mean z-score | -1.76 |
Structure conservation index | 0.07 |
SVM decision value | 0.89 |
SVM RNA-class probability | 0.876435 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15427351 90 + 23771897 AAACAAAAAGUACAAAAAACCUCUUCUACUAAUAAGGAUCAUCGCUAAUUCCUAAACAAAAUUUUUGUAAUUCUAGCUUUACAAAAUGGU ..................(((.............((((...........)))).........((((((((........)))))))).))) ( -9.70) >DroSec_CAF1 156327 90 + 1 AAACAAAAAGUAAAAAAUACCUUAUCUCCUAAUAAGGAUCAUCGGGAAUGCCUGAAAAAGGUGUAUAUAAUUCAAGCUAUACAAAAUGGU ................(((((((...((((....))))...(((((....)))))..)))))))...........(((((.....))))) ( -17.10) >DroSim_CAF1 160361 90 + 1 AAACAAAAAGUAAAAAAUACCUUAUCUACUAAUAAGGAUCAUCGGGAAUGCCUGAAAAAGAUGUAUGUAAUUCAAGCUUUACAAAAUGGU ..(((..............((((((......))))))....(((((....)))))......))).(((((........)))))....... ( -14.00) >DroEre_CAF1 157134 81 + 1 AAACAA--------AAAAU-CUAUGCUGCUAAUAAGGAUGUUCAGGAAUGCCUGAACCACUUUAGAGUAAUCCCUGCUAUACAAAAUGGC ......--------.....-......((((...(((...(((((((....)))))))..)))...))))......(((((.....))))) ( -17.40) >DroYak_CAF1 162149 88 + 1 AAACAAAUAGUACAAAAAA-CUAUUCUACUAAUAAGGGUCUUCAAGAAUGCCUUAACCACU-UAGAAUAAUCCUAACUCUUCAAAAUGGU .....((((((.......)-))))).......(((((.((.....))...)))))((((.(-(.(((............))).)).)))) ( -8.90) >consensus AAACAAAAAGUAAAAAAAACCUAUUCUACUAAUAAGGAUCAUCGGGAAUGCCUGAACAACAUUUAUGUAAUUCAAGCUAUACAAAAUGGU .........................................(((((....)))))................................... ( -0.90 = -1.66 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:49 2006