Locus 5621

Sequence ID 3L_DroMel_CAF1
Location 15,424,047 – 15,424,139
Length 92
Max. P 0.553697
window8880

overview

Window 0

Location 15,424,047 – 15,424,139
Length 92
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 83.29
Mean single sequence MFE -26.25
Consensus MFE -16.70
Energy contribution -17.65
Covariance contribution 0.95
Combinations/Pair 1.06
Mean z-score -2.16
Structure conservation index 0.64
SVM decision value 0.04
SVM RNA-class probability 0.553697
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15424047 92 - 23771897
CAUUGCGGUUAGAUGCAAUGGGCACAGCACACAUACCG----CGUAUCCUCUGGCCC------------CCAAAUAACCCCGCAAUUCCAUCGAGCAAUCGGCAACCC
.(((((((....((.....((((.(((.....((((..----.))))...)))))))------------....))....)))))))....((((....))))...... ( -22.00)
>DroSec_CAF1 153010 92 - 1
CAUUGCGGUUAGAUGCAAUGGGCCCAGCACACAUUCCG----CGUAUCCACUGGGCC------------CCAAAUAACCCCGCAAUUCCAUCGAGCAAUCGGCAACCA
.(((((((....((.....((((((((...........----........)))))))------------)...))....)))))))....((((....))))...... ( -27.71)
>DroSim_CAF1 156580 92 - 1
CAUUGCGGUUAGAUGCAAUGGGCCCAGCACACAUUCCG----CGUAUCCGCUGGGCC------------CCAAAUAACCCCGCAAUUCCAUCGAGCAAUCGGCAACCA
.(((((((....((.....(((((((((..........----.......))))))))------------)...))....)))))))....((((....))))...... ( -31.63)
>DroEre_CAF1 153941 92 - 1
CAUUGCGGUUAGAUGCAAUGGGCCCAGCACACAGUCCG----CGUUUCCUCUGGGCC------------CCAAAUAACCCCUCAAUUCCAUCGAGCAAUCGGCAACCC
..(((((((((..((....((((((((......(....----).......)))))))------------)))..)))))............(((....)))))))... ( -28.02)
>DroYak_CAF1 158729 92 - 1
CAUUGCGGUUAGAUGCAAUGGGCCCAGCACACAUUCCG----CGUUUCCUCUGGGCC------------CCAAAUAACCCCUCAAUUCCAUCGAGCAAUCGGCAACCC
..(((((((((..((....((((((((.((.(.....)----.)).....)))))))------------)))..)))))............(((....)))))))... ( -27.40)
>DroAna_CAF1 296375 107 - 1
GAUUGCGGUUAACUGCAACAGGGCCUGCAAAUU-GCCGAUACCUUAUCCUCUGUCCCACCCCACCAGUGCCAUUUCCCCCCGCCGUACCAUCAAGCAAUCGGCAACCC
(((((((((....((..((((((...((.....-)).((((...))))))))))..))....))).((((..............))))......))))))(....).. ( -20.74)
>consensus
CAUUGCGGUUAGAUGCAAUGGGCCCAGCACACAUUCCG____CGUAUCCUCUGGGCC____________CCAAAUAACCCCGCAAUUCCAUCGAGCAAUCGGCAACCC
(((((((......)))))))(((((((.......................))))))).................................((((....))))...... (-16.70 = -17.65 +   0.95)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:48 2006